Contig 011017:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014N03Sequence554000710 (4)ref|XP_009773433.1|7e-08PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris]727011017 (5)ref|XP_009773433.1|7e-41PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris]
JMFF024E13Sequence433000710 (4)ref|XP_009773433.1|2e-06PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris]688011017 (5)ref|XP_009773433.1|2e-34PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris]
JMSF005F08Sequence400011017 (5)ref|XP_009773433.1|1e-04PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris]
JMSF006C02Sequence177000710 (4)359011017 (5)
JMSF018M06Sequence197000710 (4)756011017 (5)ref|XP_009773433.1|7e-52PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF018M06+ CGTTGCAGGGAGTTA
                      ____________________________________________________________
consensus CGTTGCAGGGAGTTA
 
. : . : . : . : . : . :
rJMSF018M06+ TGGGTTGACGAAAGGGGAAACGCCGAGGCTGAAACTGCTAGACCAGAAGCTGAGGCAACA
                      ____________________________________________________________
consensus TGGGTTGACGAAAGGGGAAACGCCGAGGCTGAAACTGCTAGACCAGAAGCTGAGGCAACA
 
. : . : . : . : . : . :
rJMSF018M06+ GAAAGGTGCTTTGAACCAGATGGGAATGCTTCTGGACTCTGAGCCATGGCGGCCGCAAAG
rJMFF014N03+ GCCGCAAAG
                      ____________________________________________________________
consensus GAAAGGTGCTTTGAACCAGATGGGAATGCTTCTGGACTCTGAGCCATGGCGGCCGCAAAG
 
. : . : . : . : . : . :
rJMSF018M06+ AGGGCTGCCGGACCGGTCCGTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
rJMFF024E13+ GTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
rJMFF014N03+ AGGGCTGCCGGACCGGTCNGTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
                      ____________________________________________________________
consensus AGGGCTGCCGGACCGGTCCGTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
 
. : . : . : . : . : . :
rJMSF018M06+ CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
rJMFF024E13+ CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
rJMFF014N03+ CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
                      ____________________________________________________________
consensus CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
 
. : . : . : . : . : . :
rJMSF018M06+ TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
rJMFF024E13+ TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
rJMFF014N03+ TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
                      ____________________________________________________________
consensus TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
 
. : . : . : . : . : . :
rJMSF018M06+ AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
rJMFF024E13+ AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
rJMFF014N03+ AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
                      ____________________________________________________________
consensus AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
 
. : . : . : . : . : . :
rJMSF018M06+ CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
rJMSF005F08+ GACGACGACAAC
rJMFF024E13+ CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
rJMFF014N03+ CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
                      ____________________________________________________________
consensus CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
 
. : . : . : . : . : . :
rJMSF018M06+ AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
rJMSF005F08+ AACGTNACCGTCGGNTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
rJMSF006C02+ TGCCACGGAAAACGACTC
rJMFF024E13+ AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
rJMFF014N03+ AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
                      ____________________________________________________________
consensus AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
 
. : . : . : . : . : . :
rJMSF018M06+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMSF005F08+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMSF006C02+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMFF024E13+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMFF014N03+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
                      ____________________________________________________________
consensus CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
 
. : . : . : . : . : . :
rJMSF018M06+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
rJMSF005F08+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
rJMSF006C02+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCNTGTGAGCNTATCTTTCGCGGC
rJMFF024E13+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
rJMFF014N03+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
                      ____________________________________________________________
consensus CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
 
. : . : . : . : . : . :
rJMSF018M06+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
rJMSF005F08+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
rJMSF006C02+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGNCGACAGGTGNCGT
rJMFF024E13+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
rJMFF014N03+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
                      ____________________________________________________________
consensus AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
 
. : . : . : . : . : . :
rJMSF018M06+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
rJMSF005F08+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
rJMSF006C02+ GTCCCTAACTTTGGGNNTTNGGCACCCAGAAAATAGTGTAANTATTACAAACTTTGGGGC
rJMFF024E13+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
rJMFF014N03+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
                      ____________________________________________________________
consensus GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
 
. : . : . : . : . : . :
rJMSF018M06+ CTATTAAATATATTT--TTAGTA
rJMSF005F08+ CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
rJMSF006C02+ CTGTTAAATATATTTTGTATGTACTAAAACACAAAATGGCTACAAAAATNATATNTATAT
rJMFF024E13+ CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
rJMFF014N03+ CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
                      ____________________________________________________________
consensus CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
 
. : . : . : . : . : . :
rJMSF005F08+ ATAATTCGTGAATAATTTGGGTTTTGTAAT
rJMSF006C02+ ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAAC
rJMFF024E13+ ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAAC
rJMFF014N03+ ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAACTCTTAGTGTAAAATTAAAG
                      ____________________________________________________________
consensus ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAACTCTTAGTGTAAAATTAAAG