| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014N03 | Sequence | 554 | 000710 (4) | ref|XP_009773433.1| | 7e-08 | PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris] | 727 | 011017 (5) | ref|XP_009773433.1| | 7e-41 | PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris] |
| JMFF024E13 | Sequence | 433 | 000710 (4) | ref|XP_009773433.1| | 2e-06 | PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris] | 688 | 011017 (5) | ref|XP_009773433.1| | 2e-34 | PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris] |
| JMSF005F08 | Sequence | 400 | 011017 (5) | ref|XP_009773433.1| | 1e-04 | PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris] | |||||
| JMSF006C02 | Sequence | 177 | 000710 (4) | 359 | 011017 (5) | ||||||
| JMSF018M06 | Sequence | 197 | 000710 (4) | 756 | 011017 (5) | ref|XP_009773433.1| | 7e-52 | PREDICTED: BEL1-like homeodomain protein 4 [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF018M06+ CGTTGCAGGGAGTTA
____________________________________________________________
consensus CGTTGCAGGGAGTTA
. : . : . : . : . : . :
rJMSF018M06+ TGGGTTGACGAAAGGGGAAACGCCGAGGCTGAAACTGCTAGACCAGAAGCTGAGGCAACA
____________________________________________________________
consensus TGGGTTGACGAAAGGGGAAACGCCGAGGCTGAAACTGCTAGACCAGAAGCTGAGGCAACA
. : . : . : . : . : . :
rJMSF018M06+ GAAAGGTGCTTTGAACCAGATGGGAATGCTTCTGGACTCTGAGCCATGGCGGCCGCAAAG
rJMFF014N03+ GCCGCAAAG
____________________________________________________________
consensus GAAAGGTGCTTTGAACCAGATGGGAATGCTTCTGGACTCTGAGCCATGGCGGCCGCAAAG
. : . : . : . : . : . :
rJMSF018M06+ AGGGCTGCCGGACCGGTCCGTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
rJMFF024E13+ GTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
rJMFF014N03+ AGGGCTGCCGGACCGGTCNGTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
____________________________________________________________
consensus AGGGCTGCCGGACCGGTCCGTTAACGTCCTGAGATCGTGGCTTTTCGAGCATTTTCTTAA
. : . : . : . : . : . :
rJMSF018M06+ CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
rJMFF024E13+ CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
rJMFF014N03+ CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
____________________________________________________________
consensus CCCGTATCCGAGTGAAGCAGACAAGGTTTTGTTGTCTCGCCAAACTGGTCTGTCCAAAAA
. : . : . : . : . : . :
rJMSF018M06+ TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
rJMFF024E13+ TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
rJMFF014N03+ TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
____________________________________________________________
consensus TCAGGTTTCAAATTGGTTTATTAATGCTAGGGTAAGGCTGTGGAAACCCATGGTGGAAGA
. : . : . : . : . : . :
rJMSF018M06+ AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
rJMFF024E13+ AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
rJMFF014N03+ AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
____________________________________________________________
consensus AATGTACGAACAAGAAACTAAAGAAGAAGAAAACGCACAGACACCGATGCCGCGTGACGA
. : . : . : . : . : . :
rJMSF018M06+ CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
rJMSF005F08+ GACGACGACAAC
rJMFF024E13+ CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
rJMFF014N03+ CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
____________________________________________________________
consensus CGATGATGATAATAGTAAGGAAATTACTGCGACAACATCGACTACGCCGACGACGACAAC
. : . : . : . : . : . :
rJMSF018M06+ AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
rJMSF005F08+ AACGTNACCGTCGGNTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
rJMSF006C02+ TGCCACGGAAAACGACTC
rJMFF024E13+ AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
rJMFF014N03+ AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
____________________________________________________________
consensus AACGTTACCGTCGGCTGCAGCGACAAAAAGATGCCAATTCAATGCCACGGAAAACGACTC
. : . : . : . : . : . :
rJMSF018M06+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMSF005F08+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMSF006C02+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMFF024E13+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
rJMFF014N03+ CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
____________________________________________________________
consensus CTCACGAACTAACATCATCAATAATTATGCAGCCCAGTACGCCGCCTCGGGAAACCAAGT
. : . : . : . : . : . :
rJMSF018M06+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
rJMSF005F08+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
rJMSF006C02+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCNTGTGAGCNTATCTTTCGCGGC
rJMFF024E13+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
rJMFF014N03+ CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
____________________________________________________________
consensus CACGATGATTAATGGTAACACCGCCGCCGTGCCGCCCCCTGTGAGCCTATCTTTCGCGGC
. : . : . : . : . : . :
rJMSF018M06+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
rJMSF005F08+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
rJMSF006C02+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGNCGACAGGTGNCGT
rJMFF024E13+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
rJMFF014N03+ AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
____________________________________________________________
consensus AGCGGCGGCTCCGGTGGTGGATTGTGGCGGTGGGTTCGGGACTCCGGCGACAGGTGACGT
. : . : . : . : . : . :
rJMSF018M06+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
rJMSF005F08+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
rJMSF006C02+ GTCCCTAACTTTGGGNNTTNGGCACCCAGAAAATAGTGTAANTATTACAAACTTTGGGGC
rJMFF024E13+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
rJMFF014N03+ GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
____________________________________________________________
consensus GTCCCTAACTTTGGGACTTCGGCACCCAGAAAATAGTGTAACTATTACAAACTTTGGGGC
. : . : . : . : . : . :
rJMSF018M06+ CTATTAAATATATTT--TTAGTA
rJMSF005F08+ CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
rJMSF006C02+ CTGTTAAATATATTTTGTATGTACTAAAACACAAAATGGCTACAAAAATNATATNTATAT
rJMFF024E13+ CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
rJMFF014N03+ CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
____________________________________________________________
consensus CTATTAAATATATTT--TTAGTACTAAAACACAAAATGGCTACAAAAATTATATATATAT
. : . : . : . : . : . :
rJMSF005F08+ ATAATTCGTGAATAATTTGGGTTTTGTAAT
rJMSF006C02+ ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAAC
rJMFF024E13+ ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAAC
rJMFF014N03+ ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAACTCTTAGTGTAAAATTAAAG
____________________________________________________________
consensus ATAATTCGTGAATAATTTGGGTTTTGTAATTGACATATAACTCTTAGTGTAAAATTAAAG