Contig 011014:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010F15Sequence653011014 (10)ref|XP_002279938.1|1e-69PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera] ref|XP_726011014 (10)gb|KHG13840.1|1e-65Eukaryotic translation initiation factor 1A [Gossypium arboreum]
JMFF014E22Sequence513011014 (10)gb|KHG13840.1|1e-66Eukaryotic translation initiation factor 1A [Gossypium arboreum]688011014 (10)gb|KHG13840.1|9e-66Eukaryotic translation initiation factor 1A [Gossypium arboreum]
JMFF014J14Sequence518011014 (10)ref|XP_002279938.1|3e-70PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera] ref|XP_714011014 (10)gb|KHG13840.1|1e-65Eukaryotic translation initiation factor 1A [Gossypium arboreum]
JMFF022N23Sequence445011014 (10)gb|KHG13840.1|2e-65Eukaryotic translation initiation factor 1A [Gossypium arboreum]729011014 (10)gb|KHG13840.1|1e-65Eukaryotic translation initiation factor 1A [Gossypium arboreum]
JMSF030J17Sequence666011014 (10)gb|KHG13840.1|7e-66Eukaryotic translation initiation factor 1A [Gossypium arboreum]659011014 (10)gb|KHG13840.1|7e-66Eukaryotic translation initiation factor 1A [Gossypium arboreum]

Alignment

This contig is upended


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rJMFF010F15+                                        ATTGAGAGCTTCTCTGTCCTATGGTTTCTA
JMFF022N23-                                         ATTGAGAGCTTCTCTGTCCTATGGTTTCTA
rJMFF022N23+                                       GATTGAGAGCTTCTCTGTCCTATGGTTTCTA
JMFF014J14-                                            GAGAGCTTCTCTGTCCTATGGTTTCTA
JMFF014E22-                                            GAGAGCTTCTCTGTCCTATGGTTTCTA
JMFF010F15-                                         ATTGAGAGCTTCTCTGTCCTATGGTTTCTA
rJMSF030J17+                                             GAGCTTCTCTGTCCTATGGTTTCTA
rJMFF014J14+                                                                  TCTA
JMSF030J17-                                              GAGCTTCTCTGTCCTATGGTTTCTA
rJMFF014E22+                                           GAGAGCTTCTCTGTCCTATGGTTTCTA
                      ____________________________________________________________
consensus                                          GATTGAGAGCTTCTCTGTCCTATGGTTTCTA
 
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rJMFF010F15+          TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
JMFF022N23-           TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
rJMFF022N23+          TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
JMFF014J14-           TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
JMFF014E22-           TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTC-TAGAAGAAGGCAAGGCAAGA
JMFF010F15-           TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
rJMSF030J17+          TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
rJMFF014J14+          TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
JMSF030J17-           TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
rJMFF014E22+          TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTC-TAGAAGAAGGCAAGGCAAGA
                      ____________________________________________________________
consensus             TCTCTCTCTCTCATCTTATCACACCAGGTTTAGGGTTTCGTAGAAGAAGGCAAGGCAAGA
 
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rJMFF010F15+          ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
JMFF022N23-           ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
rJMFF022N23+          ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
JMFF014J14-           ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
JMFF014E22-           ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
JMFF010F15-           ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
rJMSF030J17+          ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
rJMFF014J14+          ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
JMSF030J17-           ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
rJMFF014E22+          ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
                      ____________________________________________________________
consensus             ATCGGAAGAAACCATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAA
 
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rJMFF010F15+          GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
JMFF022N23-           GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
rJMFF022N23+          GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
JMFF014J14-           GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
JMFF014E22-           GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
JMFF010F15-           GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
rJMSF030J17+          GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
rJMFF014J14+          GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
JMSF030J17-           GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
rJMFF014E22+          GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
                      ____________________________________________________________
consensus             GAATGAGGCTGACGATGAGAAGAGAGAGCTGGTTTTCAAAGAGGACGGCCAAGAGTACGC
 
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rJMFF010F15+          TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
JMFF022N23-           TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
rJMFF022N23+          TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
JMFF014J14-           TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
JMFF014E22-           TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
JMFF010F15-           TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
rJMSF030J17+          TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
rJMFF014J14+          TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
JMSF030J17-           TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
rJMFF014E22+          TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
                      ____________________________________________________________
consensus             TCAGGTCCTCCGTATGCTTGGTAACGGTCGCTGCGAGGCTATGTGCATCGACGGCACAAA
 
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rJMFF010F15+          GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
JMFF022N23-           GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
rJMFF022N23+          GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
JMFF014J14-           GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
JMFF014E22-           GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
JMFF010F15-           GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
rJMSF030J17+          GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
rJMFF014J14+          GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
JMSF030J17-           GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
rJMFF014E22+          GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
                      ____________________________________________________________
consensus             GCGCCTTTGTCACATCCGTGGAAAGATGCACAAGAAGGTCTGGATCGCCGCCGGTGACAT
 
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rJMFF010F15+          CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
JMFF022N23-           CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
rJMFF022N23+          CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
JMFF014J14-           CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
JMFF014E22-           CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
JMFF010F15-           CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
rJMSF030J17+          CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
rJMFF014J14+          CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
JMSF030J17-           CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
rJMFF014E22+          CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
                      ____________________________________________________________
consensus             CATACTCGTCGGTCTCCGGGACTATCAGGATGATAAGGCTGATGTGATTCTCAAGTACAT
 
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rJMFF010F15+          GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
JMFF022N23-           GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGG     
rJMFF022N23+          GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
JMFF014J14-           GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
JMFF014E22-           GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
JMFF010F15-           GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
rJMSF030J17+          GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
rJMFF014J14+          GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
JMSF030J17-           GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
rJMFF014E22+          GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
                      ____________________________________________________________
consensus             GCCAGATGAGGCGAGGTTGCTGAAGGCATATGGAGAGTTGCCAGAGAACACTAGGCTTAA
 
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rJMFF010F15+          TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
rJMFF022N23+          TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
JMFF014J14-           TGAAGGTATTGCTGGTGGTTTGGATGAAGAGGGATGATGGTGGTGCTGATGATTACATTG
JMFF014E22-           TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
JMFF010F15-           TGAAGGTATTGCTGGTGGTTTGGATGAAGAGGGATGATGGTGGTGCTGATGATTACATTG
rJMSF030J17+          TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
rJMFF014J14+          TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
JMSF030J17-           TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
rJMFF014E22+          TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
                      ____________________________________________________________
consensus             TGAAGGTATTGCTGGTGGTTTGGATGAAGA-GGATGATGGTGGTGCTGATGATTACATTG
 
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rJMFF010F15+          AGTTCGAGGATGAGGACATTGACAAGATCTAAAA                          
rJMFF022N23+          AGTTCGAGGATGAGGACATTGACAAGATCTAAAA                          
JMFF014J14-           AGTTCGAG                                                    
JMFF014E22-           AGTTC                                                       
JMFF010F15-           AGTTCGAGGATGAGGACATTGACNAGATCTAAAATTTGCACTTACCATTCATGTCTTAGT
rJMSF030J17+          AGTTCGAGGATGAGGACATTGACAAGATCTAAAATTTGCACTTACCATTCATGTCTTAGT
rJMFF014J14+          AGTTCGAGGATGAGGACATTGACAAGATCTAAAA                          
JMSF030J17-           AGTTCGAGGATGAGGACATTGACAAGATCTAAAATTTGCACTTACCATTCATGTCTTAGT
rJMFF014E22+          AGTTCGAGGATGAGGACATTGACAAGATCTAAAATTTGCACTTACCATTCATGTCTTAGT
                      ____________________________________________________________
consensus             AGTTCGAGGATGAGGACATTGACAAGATCTAAAATTTGCACTTACCATTCATGTCTTAGT
 
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JMFF010F15-           TTGCCTTGCATTCTATCATTATATGAATGAATANAGAGAGAGCTACTTATGTGTAACGTT
rJMSF030J17+          TTGCCTTGCATTCTATCATTATATGAATGAATAGAGAGAGAGCTACTTATGTGTAACGTT
JMSF030J17-           TTGCCTTGCATTCTATCATTATATGAATGAATAGAGAGAGAGCTACTTATGTGTAACGTT
rJMFF014E22+          TTGCCTTGCATTCTATCATTATATGAATGAATAGAGAGAGAGCTACTTATGTGTAACGTT
                      ____________________________________________________________
consensus             TTGCCTTGCATTCTATCATTATATGAATGAATAGAGAGAGAGCTACTTATGTGTAACGTT
 
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JMFF010F15-           GTGCATTGGG                                                  
rJMSF030J17+          GTGCATTGGGTGTATGTACAAAGTTTATGCTT                            
JMSF030J17-           GTGCATTGGGTGTATGTACNAAGTTTATGCTTTGATAGA                     
rJMFF014E22+          GTGCATTGGGTGTATGTACAAAGTTTATGCTTTGATAGAACAACTACAACAATACTGCAA
                      ____________________________________________________________
consensus             GTGCATTGGGTGTATGTACAAAGTTTATGCTTTGATAGAACAACTACAACAATACTGCAA