| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008C08 | Sequence | 578 | 011010 (4) | ref|XP_009621255.1| | 2e-26 | PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Nicotiana tomentosifo | 672 | 011010 (4) | ref|XP_010275481.1| | 2e-57 | PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X2 [Nelumbo nucif |
| JMFF013O12 | Sequence | 776 | 011010 (4) | ref|XP_010275481.1| | 5e-57 | PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X2 [Nelumbo nucif | |||||
| JMSF042L03 | Sequence | 256 | 011010 (4) | gb|EYU19455.1| | 2e-23 | hypothetical protein MIMGU_mgv1a013552mg [Erythranthe guttata] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF008C08- TCCTCTCGTTCGTCTTCACCCTTCACCG
____________________________________________________________
consensus TCCTCTCGTTCGTCTTCACCCTTCACCG
. : . : . : . : . : . :
JMFF008C08- GAACTGCAGCACTGCAGCAGAAGAAACTCTTCCATTCAATCCATGACTTCATCCTCCTTC
____________________________________________________________
consensus GAACTGCAGCACTGCAGCAGAAGAAACTCTTCCATTCAATCCATGACTTCATCCTCCTTC
. : . : . : . : . : . :
JMFF008C08- ATATCTTAACATTCCAAAATCATCTTCTCTACCTGTCTTTCACTCGTCACCTGCAAATGG
____________________________________________________________
consensus ATATCTTAACATTCCAAAATCATCTTCTCTACCTGTCTTTCACTCGTCACCTGCAAATGG
. : . : . : . : . : . :
JMFF008C08- GTTCCAATGTTCTCCCTCAGGCGTTGTTTATGCTTCCAAGGAACCCTACTCAATGGGCTC
____________________________________________________________
consensus GTTCCAATGTTCTCCCTCAGGCGTTGTTTATGCTTCCAAGGAACCCTACTCAATGGGCTC
. : . : . : . : . : . :
JMFF008C08- CCAAGAAGTTAGCGTCTTCTGCCTTTCTTCGAGCTGGGCAGTTCAATTCACCTGCAATTC
____________________________________________________________
consensus CCAAGAAGTTAGCGTCTTCTGCCTTTCTTCGAGCTGGGCAGTTCAATTCACCTGCAATTC
. : . : . : . : . : . :
JMFF008C08- GCCTGTCCAGGAATTCATCCAGTTCTTTCCGCACTGCCAATTTGAAGCGTTTTGTTGTCA
rJMFF013O12+ CTGTCCAGGAATTCATCCAGTTCTTTCCGCACTGCCAATTTGAAGCGTTTTGTTGTCA
____________________________________________________________
consensus GCCTGTCCAGGAATTCATCCAGTTCTTTCCGCACTGCCAATTTGAAGCGTTTTGTTGTCA
. : . : . : . : . : . :
JMFF008C08- GAGCTGAAGCGGAGGAGGGAGTGGCCGAGGAAACTGCTCCCGAACCGGAAGCCGGAGTTG
rJMFF008C08+ GAAGCCGGAGTTG
rJMFF013O12+ GGGCTGAAGCGGAGGAGGGAGTGGCCGAGGAAACTGCTC--GAACCGGAAGCCGGAGTTG
____________________________________________________________
consensus GGGCTGAAGCGGAGGAGGGAGTGGCCGAGGAAACTGCTCCCGAACCGGAAGCCGGAGTTG
. : . : . : . : . : . :
JMFF008C08- AAACCGAGTCGGAGGCTGAAGCGGAAGTTGCAACTGAGGAAAAGCCTCCTAGGAAGCCTC
rJMFF008C08+ AAACCGAGTCGGAGGCTGAAGCGGAAGTTGCAACTGAGGAAAAGCCTCCTAGGAAGCCTC
rJMFF013O12+ AAACCGAGTCGGAGGCTGAAGCGGAAGTTGCAACTGAGGAAAAGCCTCCTAGGAAGCCTC
____________________________________________________________
consensus AAACCGAGTCGGAGGCTGAAGCGGAAGTTGCAACTGAGGAAAAGCCTCCTAGGAAGCCTC
. : . : . : . : . : . :
JMFF008C08- GGATTAAGCTCGGAGATATAATGGGGATACTGAACAAGAGAGCGATTGAAGCATCTGATG
rJMFF008C08+ GGATTAAGCTCGGAGATATAATGGGGATACTGAACAAGAGAGCGATTGAAGCATCTGATG
rJMFF013O12+ GGATTAAGCTCGGAGATATAATGGGGATACTGAACAAGAGAGCGATTGAAGCATCTGATG
____________________________________________________________
consensus GGATTAAGCTCGGAGATATAATGGGGATACTGAACAAGAGAGCGATTGAAGCATCTGATG
. : . : . : . : . : . :
JMFF008C08- AGAAAAGGCCTACACCAGATCTTAGGACCGGCGATGTTGTAGAGATCAAGCTGGAAGTCC
rJMSF042L03+ TTAGGACCGGCGANGTTGTAGAGATCAAGCTGGAAGTCC
rJMFF008C08+ AGAAAAGGCCTACACCAGATCTTAGGACCGGCGATGTTGTAGAGATCAAGCTGGAAGTCC
rJMFF013O12+ AGAAAAGGCCTACACCAGATCTTAGGACCGGCGATGTTGTAGAGATCAAGCTGGAAGTCC
____________________________________________________________
consensus AGAAAAGGCCTACACCAGATCTTAGGACCGGCGATGTTGTAGAGATCAAGCTGGAAGTCC
. : . : . : . : . : . :
JMFF008C08- CGGAAAATAG
rJMSF042L03+ CGGAAAATAGGAGGAGATTGTTTGTGTATAAAGGTATAATTATCTCGAAGCAGAATGCTG
rJMFF008C08+ CGGAAAATAGGAGGAGATTGTCTGTGTATAAAGGTATAATTATCTCGAAGCAGAATGCTG
rJMFF013O12+ CGGAAAATAGGAGGAGATTGTCTGTGTATAAAGGTATAATTATCTCGAAGCAGAATGCTG
____________________________________________________________
consensus CGGAAAATAGGAGGAGATTGTCTGTGTATAAAGGTATAATTATCTCGAAGCAGAATGCTG
. : . : . : . : . : . :
rJMSF042L03+ GTATTCACANCACTATTNGGATTCGGAGGATTATTGCCGGCATAGGAGTNGAAATCGNGT
rJMFF008C08+ GTATTCACACCACTATTCGGATTCGGAGGATTATTGCTGGCATTGGAGTTGAAATCGTGT
rJMFF013O12+ GTATTCACACCACTATTCGGATTCGGAGGATTATTGCTGGCATTGGAGTTGAAATCGTGT
____________________________________________________________
consensus GTATTCACACCACTATTCGGATTCGGAGGATTATTGCTGGCATTGGAGTTGAAATCGTGT
. : . : . : . : . : . :
rJMSF042L03+ TCCCTGTATATTCACCAAANGTCAAAGNGATCAGAGTAGNGAGCCACNGGAAAGTGAGGN
rJMFF008C08+ TCCCTGTATATTCACCAAATGTCAAAGAGATCAGAGTAGTGAGCCACCGGAAAGTGAGGA
rJMFF013O12+ TCCCTGTATATTCACCAAATGTCAAAGAGATCAGAGTAGTGAGCCACCGGAAAGTGAGGA
____________________________________________________________
consensus TCCCTGTATATTCACCAAATGTCAAAGAGATCAGAGTAGTGAGCCACCGGAAAGTGAGGA
. : . : . : . : . : . :
rJMSF042L03+ GGGCNAAATTGTANTATNTNCGGGATAA
rJMFF008C08+ GGGCAAAATTGTACTATTTGCGGGATAAACTTCCCAGGCTTTCTACTTTCAAATGAAGTC
rJMFF013O12+ GGGCAAAATTGTACTATTTGCGGGATAAACTTCCCAGGCTTTCTACTTTCAAATGAAGTC
____________________________________________________________
consensus GGGCAAAATTGTACTATTTGCGGGATAAACTTCCCAGGCTTTCTACTTTCAAATGAAGTC
. : . : . : . : . : . :
rJMFF008C08+ TTCAGTTCATTCATGCTGTTTTGGAATTCAGTGTGTGCTCTTTTAACACTCTTCTCATTT
rJMFF013O12+ TTCAGTTCATTCATGCTGTTTTGGAATTCAGTGTGTGCTCTTTTAACACTCTTCTCATTT
____________________________________________________________
consensus TTCAGTTCATTCATGCTGTTTTGGAATTCAGTGTGTGCTCTTTTAACACTCTTCTCATTT
. : . : . : . : . : . :
rJMFF008C08+ TCCCATTTGCATGTGTCTCTAAATCTGTAAATTTTTGTACTCTGTTGTTAGGTGGTAATA
rJMFF013O12+ TCCCATTTGCATGTGTCTCTAAATCTGTAAATTTTTGTACTCTGTTGTTAGGTGGTAATA
____________________________________________________________
consensus TCCCATTTGCATGTGTCTCTAAATCTGTAAATTTTTGTACTCTGTTGTTAGGTGGTAATA
. : . : . : . : . : . :
rJMFF008C08+ ACATGATCATTGATTCTTGATTACCAACTTCATGTGCTGGTTTGCTACATGGCTTTGCTA
rJMFF013O12+ ACATGATCATTGATTCTTGATTACCAACTTCATGTGCTGGTTTGCTACATGGCTTTGCTA
____________________________________________________________
consensus ACATGATCATTGATTCTTGATTACCAACTTCATGTGCTGGTTTGCTACATGGCTTTGCTA
. : . : . : . : . : . :
rJMFF008C08+ TGAGTATTTTAAGTTATCTAGAGTTCATGACTTACAACTTTTCAAATTCGAATTTTATA
rJMFF013O12+ TGAGTATTTTAAGTTATCTAGAGTTCATGACTTACAACTTTTCAAATTCGAATTTTATAT
____________________________________________________________
consensus TGAGTATTTTAAGTTATCTAGAGTTCATGACTTACAACTTTTCAAATTCGAATTTTATAT