Contig 011006:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011M11Sequence528006000 (2)ref|XP_004229727.1|3e-61PREDICTED: trihelix transcription factor ASIL2 [Solanum lycopersicum]669011006 (2)ref|XP_006354664.1|101PREDICTED: uncharacterized protein LOC102594353 [Solanum tuberosum]
JMFF029M21Sequence518006000 (2)ref|XP_009592908.1|205PREDICTED: uncharacterized protein LOC104089669 [Nicotiana tomentosiformis]658011006 (2)ref|XP_006354664.1|101PREDICTED: uncharacterized protein LOC102594353 [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF029M21+                                                            AACACTAGTT
rJMFF011M11+                                                             ACACTAGTT
                      ____________________________________________________________
consensus                                                               AACACTAGTT
 
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rJMFF029M21+          ATGGGTCCAATAGGATGTTAAAAGGAGATTGTTTTGGGAAGAAGTCTGCTGATTTGGGGA
rJMFF011M11+          ATGGGTCCAATAGGATGTTAAAAGGAGATTGTTTTGGGAAGAAGTCTGCTGATTTGGGGA
                      ____________________________________________________________
consensus             ATGGGTCCAATAGGATGTTAAAAGGAGATTGTTTTGGGAAGAAGTCTGCTGATTTGGGGA
 
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rJMFF029M21+          AAAGGGTTAGTGGGGAAGAAGAGGTGGGGGAGAAGAGGAAGGCAGACCCAATTGCTGAGA
rJMFF011M11+          AAAGGGTTAGTGGGGAAGAAGAGGTGGGGGAGAAGAGGAAGGCAGACCCAATTGCTGAGA
                      ____________________________________________________________
consensus             AAAGGGTTAGTGGGGAAGAAGAGGTGGGGGAGAAGAGGAAGGCAGACCCAATTGCTGAGA
 
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rJMFF029M21+          TGGTGACAGCAATTAAGGCATTGGGAGATGGGTTTCTGAAGATGGAGCGGATGAAAATGG
rJMFF011M11+          TGGTGACAGCAATTAAGGCATTGGGAGATGGGTTTCTGAAGATGGAGCGGATGAAAATGG
                      ____________________________________________________________
consensus             TGGTGACAGCAATTAAGGCATTGGGAGATGGGTTTCTGAAGATGGAGCGGATGAAAATGG
 
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rJMFF029M21+          AATTGGCTCGGGAATTAGAAGAAATGAAGATGGAAATGGAAATGAAAAGGACTGAGATGA
rJMFF011M11+          AATTGGCTCGGGAATTAGAAGAAATGAAGATGGAAATGGAAATGAAAAGGACTGAGATGA
                      ____________________________________________________________
consensus             AATTGGCTCGGGAATTAGAAGAAATGAAGATGGAAATGGAAATGAAAAGGACTGAGATGA
 
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rJMFF029M21+          TTCTTGAATCGCAACAGAGGATTGTGGAAGCTTTTGCCAATGCTCTCTCTGAGAAGAATA
rJMFF011M11+          TTCTTGAATCGCAACAGAGGATTGTGGAAGCTTTTGCCAATGCTCTCTCTGAGAAGAATA
                      ____________________________________________________________
consensus             TTCTTGAATCGCAACAGAGGATTGTGGAAGCTTTTGCCAATGCTCTCTCTGAGAAGAATA
 
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rJMFF029M21+          ATAGTAATAAGAAGGCCAAGAGGATGCCTACCCCGGAATGTCAGATGCCTCATAGTTGAT
rJMFF011M11+          ATAGTAATAAGAAGGCCAAGAGGATGCCTACCCCGGAATGTCAGATGCCTCATAGTTGAT
                      ____________________________________________________________
consensus             ATAGTAATAAGAAGGCCAAGAGGATGCCTACCCCGGAATGTCAGATGCCTCATAGTTGAT
 
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rJMFF029M21+          TGTCCTTGGTTAAATGCATAAGTTTAGGTGTTGGTTGATCCATCACCCATCTGGAGATGG
rJMFF011M11+          TGTCCTTGGTTAAATGCATAAGTTTAGGTGTTGGTTGATCCATCACCCATCTGGAGATGG
                      ____________________________________________________________
consensus             TGTCCTTGGTTAAATGCATAAGTTTAGGTGTTGGTTGATCCATCACCCATCTGGAGATGG
 
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rJMFF029M21+          GTTATTTTTGACATTTCTGAAACAAGGGAATCGTGATGTATTGGAACTCTGGTGCACTTC
rJMFF011M11+          GTTATTTTTGACATTTCTGAAACAAGGGAATCGTGATGTATTGGAACTCTGGTGCACTTC
                      ____________________________________________________________
consensus             GTTATTTTTGACATTTCTGAAACAAGGGAATCGTGATGTATTGGAACTCTGGTGCACTTC
 
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rJMFF029M21+          TGGTGTGCCTAAGTTTACAACTTATTTTCACACATGAATAGAGATTGGAATTTGTCAACT
rJMFF011M11+          TGGTGTGCCTAAGTTTACAACTTATTTTCACACATGAATAGAGATTGGAATTTGTCAACT
                      ____________________________________________________________
consensus             TGGTGTGCCTAAGTTTACAACTTATTTTCACACATGAATAGAGATTGGAATTTGTCAACT
 
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rJMFF029M21+          TTAAACTTAAGTTAGTTCTGTAGCTGAGTAGCTTGTTTATGTACTCATGTAAGCCTGCTC
rJMFF011M11+          TTAAACTTAAGTTAGTTCTGTAGCTGAGTAGCTTGTTTATGTACTCATGTAAGCCTGCTC
                      ____________________________________________________________
consensus             TTAAACTTAAGTTAGTTCTGTAGCTGAGTAGCTTGTTTATGTACTCATGTAAGCCTGCTC
 
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rJMFF029M21+          AAGAAATTGCACTTATGTGCTGCTGCAATGTAGTTGTGTACTTAATAT            
rJMFF011M11+          AAGAAATTGCACTTATGTGCTGCTGCAATGTAGTTGTGTACTTAATATTATCTCATCAAT
                      ____________________________________________________________
consensus             AAGAAATTGCACTTATGTGCTGCTGCAATGTAGTTGTGTACTTAATATTATCTCATCAAT