| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011J06 | Sequence | 553 | 001604 (2) | gb|AFA35956.1| | 5e-60 | ent-kaurene oxidase, partial [Nicotiana attenuata] | 770 | 011003 (2) | ref|XP_006354940.1| | 2e-81 | PREDICTED: ent-kaurene oxidase, chloroplastic-like [Solanum tuberosum] |
| JMFF032P18 | Sequence | 601 | 001604 (2) | gb|AFA35956.1| | 3e-67 | ent-kaurene oxidase, partial [Nicotiana attenuata] | 794 | 011003 (2) | ref|XP_006354940.1| | 5e-95 | PREDICTED: ent-kaurene oxidase, chloroplastic-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMFF032P18+ ACTACAGAATGGGCTATG
____________________________________________________________
consensus ACTACAGAATGGGCTATG
. : . : . : . : . : . :
rJMFF032P18+ TATGAACTAGCTAAAGATCCAGAACGACAGGATAGATTATTTCGTGAAATT-CAAGGTGT
rJMFF011J06+ CTAAAGATCCAGANCGACAGGATAGATTATTTCGTGAAATTCCAAGGTGT
____________________________________________________________
consensus TATGAACTAGCTAAAGATCCAGAACGACAGGATAGATTATTTCGTGAAATTCCAAGGTGT
. : . : . : . : . : . :
rJMFF032P18+ CTGTGGGGGTGGTAAAGTAACAGAAGACAAAGTGCGACAACTCCCCTACCTTTCTGCTAT
rJMFF011J06+ CTGTGGGGGTGGTAAAGTAACAGAAGACAAAGTGCGACAACTCCCCTACCTTTCTGCTAT
____________________________________________________________
consensus CTGTGGGGGTGGTAAAGTAACAGAAGACAAAGTGCGACAACTCCCCTACCTTTCTGCTAT
. : . : . : . : . : . :
rJMFF032P18+ ATTTCATGAAACATTGAGAAAACATGGTCCCGTTCCTATTGTTCCTCTCCGATATGTTCA
rJMFF011J06+ ATTTCATGAAACATTGAGAAAACATGGTCCCGTTCCTATTGTTCCTCTCCGATATGTTCA
____________________________________________________________
consensus ATTTCATGAAACATTGAGAAAACATGGTCCCGTTCCTATTGTTCCTCTCCGATATGTTCA
. : . : . : . : . : . :
rJMFF032P18+ CGAGGATATCGAACTGGGAGGGTACTATATTCCTAAAGGAACCGAGATTGCTGTGAACAT
rJMFF011J06+ CGAGGATATCGAACTGGGAGGGTACTATATTCCTAAAGGAACCGAGATTGCTGTGAACAT
____________________________________________________________
consensus CGAGGATATCGAACTGGGAGGGTACTATATTCCTAAAGGAACCGAGATTGCTGTGAACAT
. : . : . : . : . : . :
rJMFF032P18+ TCATGCATGCAACATGGAAAAGGGGGTATGGGAGAGTCCTACAGAGTGGAAGCCCGAACG
rJMFF011J06+ TCATGCATGCAACATGGAAAAGGGGGTATGGGAGAGTCCTACAGAGTGGAAGCCCGAACG
____________________________________________________________
consensus TCATGCATGCAACATGGAAAAGGGGGTATGGGAGAGTCCTACAGAGTGGAAGCCCGAACG
. : . : . : . : . : . :
rJMFF032P18+ ATTTCTCGAAGGGAGGTATGAGCAGAACGATTTGTTCAAGACGATGGCGTTTGGAGCGGG
rJMFF011J06+ ATTTCTCGAAGGGAGGTATGAGCAGAACGATTTGTTCAAGACGATGGCGTTTGGAGCGGG
____________________________________________________________
consensus ATTTCTCGAAGGGAGGTATGAGCAGAACGATTTGTTCAAGACGATGGCGTTTGGAGCGGG
. : . : . : . : . : . :
rJMFF032P18+ GAAGAGGTCGTGTGCTGGTGCTCTCCAGGCGATGACGATTTCTTGCCTGACGATCGCGAG
rJMFF011J06+ GAAGAGGTCGTGTGCTGGTGCTCTCCAGGCGATGACGATTTCTTGCCTGACGATCGCGAG
____________________________________________________________
consensus GAAGAGGTCGTGTGCTGGTGCTCTCCAGGCGATGACGATTTCTTGCCTGACGATCGCGAG
. : . : . : . : . : . :
rJMFF032P18+ AATGGTTCAAGAATTTGAATGGAGGCTGACGGGTAGTGAAGAAGAAAATGTTGCTACTGT
rJMFF011J06+ AATGGTTCAAGAATTTGAATGGAGGCTGACGGGTAGTGAAGAAGAAAATGTTGCTACTGT
____________________________________________________________
consensus AATGGTTCAAGAATTTGAATGGAGGCTGACGGGTAGTGAAGAAGAAAATGTTGCTACTGT
. : . : . : . : . : . :
rJMFF032P18+ GGGTCTTACTGCCTATAAACTTCATCCTCTAATGGCAAACATAAAGCCAAGAAATTGATT
rJMFF011J06+ GGGTCTTACTGCCTATAAACTTCATCCTCTAATGGCAAACATAAAGCCAAGAAATTGATT
____________________________________________________________
consensus GGGTCTTACTGCCTATAAACTTCATCCTCTAATGGCAAACATAAAGCCAAGAAATTGATT
. : . : . : . : . : . :
rJMFF032P18+ TCGAAGAAAAAGGTGTTGAAATGTTAAGGGAAAGTGAAGCTCTTGGTCCTCCAATTATAA
rJMFF011J06+ TCGAAGAAAAAGGTGTTGAAATGTTAAGGGAAAGTGAAGCTCTTGGTCCTCCAATTATAA
____________________________________________________________
consensus TCGAAGAAAAAGGTGTTGAAATGTTAAGGGAAAGTGAAGCTCTTGGTCCTCCAATTATAA
. : . : . : . : . : . :
rJMFF032P18+ GGTATATTGGACTCGATGCTTGAATTGTAGGGGCTTTCACTTTTGATTGATTCTCCAGTT
rJMFF011J06+ GGTATATTGGACTCGATGCTTGAATTGTAGGGGCTTTCACTTTTGATTGATTCTCCAGTT
____________________________________________________________
consensus GGTATATTGGACTCGATGCTTGAATTGTAGGGGCTTTCACTTTTGATTGATTCTCCAGTT
. : . : . : . : . : . :
rJMFF032P18+ AGTAGCGTAGCGAGGTTTTTTCTTGGAGCAGAACTATGAGACGCTGTAAAATTTTCAAGG
rJMFF011J06+ AGTAGCGTAGCGAGGTTTTTTCTTGGAGCAGAACTATGAGACGCTGTAAAATTTTCAAGG
____________________________________________________________
consensus AGTAGCGTAGCGAGGTTTTTTCTTGGAGCAGAACTATGAGACGCTGTAAAATTTTCAAGG
. : . : . : . : . : . :
rJMFF032P18+ TTGAACTTTTTAATTTCACATCCGTTTTCTCCTTCCCTAGTGTTTTTCCTTCCAAAT
rJMFF011J06+ TTGAACTTTTTAATTTCACATCCGTTTTCTCCTTCCCTAGTGTTTTTCCTTCCAAATAAT
____________________________________________________________
consensus TTGAACTTTTTAATTTCACATCCGTTTTCTCCTTCCCTAGTGTTTTTCCTTCCAAATAAT