Contig 011001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011H24Sequence541020573emb|CDP07350.1|3e-17unnamed protein product [Coffea canephora]673011001 (3)ref|XP_002306954.1|3e-83hypothetical protein POPTR_0005s26610g [Populus trichocarpa] gb|EEE93950.1| hypo
JMSF045A15Sequence734011001 (3)emb|CDP07350.1|5e-92unnamed protein product [Coffea canephora]258011001 (3)gb|AAV50008.1|3e-31protein disulfide isomerase [Malus domestica]

Alignment

This contig is upended


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JMSF045A15-                               GGTCTCTGTTGGCTCCACATTCTTATTGTCTCTTCTTGCC
                      ____________________________________________________________
consensus                                 GGTCTCTGTTGGCTCCACATTCTTATTGTCTCTTCTTGCC
 
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JMSF045A15-           ACCAAAGATCGTGACTTTCTCCTCTCCCCTTCTGGAACTCAGGTGAAAATTTCTGAGCTT
                      ____________________________________________________________
consensus             ACCAAAGATCGTGACTTTCTCCTCTCCCCTTCTGGAACTCAGGTGAAAATTTCTGAGCTT
 
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JMSF045A15-           CGAACCAAAGTTATTGGTATATACTTTTCGGCTAACTGACTCGGAGGCGTTTGCTGCTTA
                      ____________________________________________________________
consensus             CGAACCAAAGTTATTGGTATATACTTTTCGGCTAACTGACTCGGAGGCGTTTGCTGCTTA
 
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JMSF045A15-           CCGGGCATCCATGCCTTGGCTTGCAATTCCATTTTCAGACCTGGAAACCAAGAAATCCTT
                      ____________________________________________________________
consensus             CCGGGCATCCATGCCTTGGCTTGCAATTCCATTTTCAGACCTGGAAACCAAGAAATCCTT
 
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JMSF045A15-           GAACCAGAGGTTCAATGTTGAGGGCATTCCTTGCCTGGTTGTTCTGCAGCCTAACAATAA
                      ____________________________________________________________
consensus             GAACCAGAGGTTCAATGTTGAGGGCATTCCTTGCCTGGTTGTTCTGCAGCCTAACAATAA
 
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JMSF045A15-           CAAAGATGATGCAATAGTTTATGATGGGGTTGAACTTGTTTATCGGTATGGGGTGGAAGC
                      ____________________________________________________________
consensus             CAAAGATGATGCAATAGTTTATGATGGGGTTGAACTTGTTTATCGGTATGGGGTGGAAGC
 
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JMSF045A15-           TTTTCCGTTTACGAAAGAGAGGTTGCAGAAGTTGCGAGAGGACGAGAGGGAGAAACACGA
                      ____________________________________________________________
consensus             TTTTCCGTTTACGAAAGAGAGGTTGCAGAAGTTGCGAGAGGACGAGAGGGAGAAACACGA
 
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JMSF045A15-           AAAGCAGACTTTGAAAGACTTGTTAACGAACAGCAATAGAGATTTTGTTTTAGGCCACTC
                      ____________________________________________________________
consensus             AAAGCAGACTTTGAAAGACTTGTTAACGAACAGCAATAGAGATTTTGTTTTAGGCCACTC
 
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JMSF045A15-           CACAATGGGAAAGGTGCCTGTCACTTCGTTAACTGGTAAAACAATCGGGCTGTATTTCTC
                      ____________________________________________________________
consensus             CACAATGGGAAAGGTGCCTGTCACTTCGTTAACTGGTAAAACAATCGGGCTGTATTTCTC
 
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JMSF045A15-           AGCCAAATGGTGTGTCCCGGGGTTGAAGTTTACTTCCAAGCTAATCTCGGTTTACCAAAA
rJMFF011H24+                                                         CGGTTTACCAAAA
                      ____________________________________________________________
consensus             AGCCAAATGGTGTGTCCCGGGGTTGAAGTTTACTTCCAAGCTAATCTCGGTTTACCAAAA
 
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JMSF045A15-           GATTAAGCAGAGGCTACCCGAGGGTGAGGATTTTGAAATAGTTTATGTGTCGAGCGACGA
rJMFF011H24+          GATTAAGCAGAGGCTACCCGAGGGTGAGGATTTTGAAATAGTTTATGTGTCGAGCGACGA
                      ____________________________________________________________
consensus             GATTAAGCAGAGGCTACCCGAGGGTGAGGATTTTGAAATAGTTTATGTGTCGAGCGACGA
 
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JMSF045A15-           TGGGGAAATGGAATTCGAAGGCTATTTCGAGGCGATGCCATGGTTGGCACTCCCTTTTGG
rJMSF045A15+                                                CATGGTTGGCANTCCCTTTCGG
rJMFF011H24+          TGGGGAAATGGAATTCGAAGGCTATTTCGAGGCGATGCCATGGTTGGCACTCCCTTTTGG
                      ____________________________________________________________
consensus             TGGGGAAATGGAATTCGAAGGCTATTTCGAGGCGATGCCATGGTTGGCACTCCCTTTTGG
 
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JMSF045A15-           TGATCCAAATGCCAAGAACCTAANAAAGTATTTC                          
rJMSF045A15+          TGATCCAAATGCCAAGAACCTANGAAAGTATTTNGACATTNGAGGGNTTCCCAGCTTGGT
rJMFF011H24+          TGATCCAAATGCCAAGAACCTAAGAAAGTATTTCGACATTAGAGGGATTCCCAGCTTGGT
                      ____________________________________________________________
consensus             TGATCCAAATGCCAAGAACCTAAGAAAGTATTTCGACATTAGAGGGATTCCCAGCTTGGT
 
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rJMSF045A15+          AATCTTGGGGCCTGATGGCAAAACTNTGAGCAAACAAGGGAGGANCCTTGTATGCCTGTA
rJMFF011H24+          AATCTTGGGGCCTGATGGCAAAACTCTGAGCAAACAAGGGAGGAACCTTGTATGCCTGTA
                      ____________________________________________________________
consensus             AATCTTGGGGCCTGATGGCAAAACTCTGAGCAAACAAGGGAGGAACCTTGTATGCCTGTA
 
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rJMSF045A15+          TAAAGAAAATGCATATCCCTTCACAAAGGCGAGAATGGAGGCGCTGGAGAGGGAGATGGA
rJMFF011H24+          TAAAGAAAATGCATATCCCTTCACAAAGGCGAGAATGGAGGCGCTGGAGAGGGAGATGGA
                      ____________________________________________________________
consensus             TAAAGAAAATGCATATCCCTTCACAAAGGCGAGAATGGAGGCGCTGGAGAGGGAGATGGA
 
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rJMSF045A15+          CGAAGAGGCGAAATGGCTTCCAAAATCGAAGCACCNCGGGGNGCNTAAGCATGAG     
rJMFF011H24+          CGAAGAGGCGAAATGGCTTCCAAAATCGAAGCACCACGGGGGGCATAAGCATGAGCTAAG
                      ____________________________________________________________
consensus             CGAAGAGGCGAAATGGCTTCCAAAATCGAAGCACCACGGGGGGCATAAGCATGAGCTAAG
 
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rJMFF011H24+          TCTGGTCTCGGAAGGGACTGGGGGTGGAGCTTACATATGTTGTGAGTGCGACGAGCAGGG
                      ____________________________________________________________
consensus             TCTGGTCTCGGAAGGGACTGGGGGTGGAGCTTACATATGTTGTGAGTGCGACGAGCAGGG
 
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rJMFF011H24+          GCATGGGTGGGCTTACCAGTGCCTCGAGTGCGGGTATGAAGTGCACCCCAATTGCGTGAG
                      ____________________________________________________________
consensus             GCATGGGTGGGCTTACCAGTGCCTCGAGTGCGGGTATGAAGTGCACCCCAATTGCGTGAG
 
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rJMFF011H24+          GACTATCGACCATGGTCAGACCTCCTAGAGGTAATCAAACTAAACCAACTTACTGGACTG
                      ____________________________________________________________
consensus             GACTATCGACCATGGTCAGACCTCCTAGAGGTAATCAAACTAAACCAACTTACTGGACTG
 
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rJMFF011H24+          GTTTGTTGTTTGTGTAATTGGGAAGATTAAGACACATTCCCTTCATGCAGCCATGGGGTT
                      ____________________________________________________________
consensus             GTTTGTTGTTTGTGTAATTGGGAAGATTAAGACACATTCCCTTCATGCAGCCATGGGGTT
 
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rJMFF011H24+          TTCAGCTTTGTTGTATTAGTACTATGTATTGTCTATGGTTAAGTTTTAATTTGTTACTCG
                      ____________________________________________________________
consensus             TTCAGCTTTGTTGTATTAGTACTATGTATTGTCTATGGTTAAGTTTTAATTTGTTACTCG