| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010I11 | Sequence | 543 | 008714 (11) | ref|XP_008357155.1| | 7e-59 | PREDICTED: 5'-3' exoribonuclease 3-like [Malus domestica] | 780 | 010996 (3) | ref|XP_009591848.1| | 3e-12 | PREDICTED: 5'-3' exoribonuclease 3-like isoform X3 [Nicotiana tomentosiformis] |
| JMFF020C18 | Sequence | 536 | 008714 (11) | ref|XP_008357155.1| | 4e-58 | PREDICTED: 5'-3' exoribonuclease 3-like [Malus domestica] | 671 | 010996 (3) | ref|XP_009591848.1| | 1e-10 | PREDICTED: 5'-3' exoribonuclease 3-like isoform X3 [Nicotiana tomentosiformis] |
| JMFF051L10 | Sequence | 522 | 008714 (11) | ref|XP_009783160.1| | 2e-55 | PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris] | 446 | 010996 (3) | |||
This contig is upended
. : . : . : . : . : . :
rJMFF010I11+ ATGATGATAATCATAGCCAGACTAATGCTTATTCGGGCTCTCATCATGCNTACAGGAGGC
____________________________________________________________
consensus ATGATGATAATCATAGCCAGACTAATGCTTATTCGGGCTCTCATCATGCNTACAGGAGGC
. : . : . : . : . : . :
rJMFF020C18+ CATCATGAAAGGATTGACCAATCTGTTGCCCAGAGTAGGGATTATCATAGAC
rJMFF010I11+ NTAATCCTCATCATGAAAGGATTGACCAATCTGTTGCCCAGAGTAGGGATTATCATAGAC
____________________________________________________________
consensus NTAATCCTCATCATGAAAGGATTGACCAATCTGTTGCCCAGAGTAGGGATTATCATAGAC
. : . : . : . : . : . :
rJMFF020C18+ ATGGATATTATGCACCAGGGTTGCAGCACAATGGGGGACACTCCTACCACTCAGGTGCCA
rJMFF010I11+ ATGGATATTATGCACCAGGGTTGCAGCACAATGGGGGACACTCCTACCACTCAGGTGCCA
____________________________________________________________
consensus ATGGATATTATGCACCAGGGTTGCAGCACAATGGGGGACACTCCTACCACTCAGGTGCCA
. : . : . : . : . : . :
rJMFF020C18+ CACACCATCAACATGTGCACTTAACTCCCCATCCACCACCAACTCATATACCCAATCACA
rJMFF010I11+ CACACCATCAACATGTGCACTTAACTCCCCATCCACCACCAACTCATATACCCAATCACA
____________________________________________________________
consensus CACACCATCAACATGTGCACTTAACTCCCCATCCACCACCAACTCATATACCCAATCACA
. : . : . : . : . : . :
rJMFF051L10+ TTGGGCAGTGGTCAAG
rJMFF020C18+ GAGGATATAATCATCAACCTTACGAGTCTGGTAGTTATAATCATTTGGGCAGTGGTCAAG
rJMFF010I11+ GAGGATATAATCATCAACCTTACGAGTCTGGTAGTTATAATCATTTGGGCAGTGGTCAAG
____________________________________________________________
consensus GAGGATATAATCATCAACCTTACGAGTCTGGTAGTTATAATCATTTGGGCAGTGGTCAAG
. : . : . : . : . : . :
rJMFF051L10+ GTCCTCATAGCAACCCAGGTGGTGGCAGAGGATATAATTATCCACACCAATCAAGCAATC
rJMFF020C18+ GTCCTCATAGCAACCCAGGTGGTGGCAGAGGATATAATTATCCACACCAATCAAGCAATC
rJMFF010I11+ GTCCTCATAGCAACCCAGGTGGTGGCAGAGGATATAATTATCCACACCAATCAAGCAATC
____________________________________________________________
consensus GTCCTCATAGCAACCCAGGTGGTGGCAGAGGATATAATTATCCACACCAATCAAGCAATC
. : . : . : . : . : . :
rJMFF051L10+ AATATGCAGCTTTAAATAGGGGATCAAATAGACGACCACCTTTTGACTATCGGCGCTAGA
rJMFF020C18+ AATATGCAGCTTTAAATAGGGGATCAAATAGACGACCACCTTCTGACTATCGGCGCTAGA
rJMFF010I11+ AATATGCAGCTTTAAATAGGGGATCAAATAGACGACCACCTTCTGACTATCGGCGCTAGA
____________________________________________________________
consensus AATATGCAGCTTTAAATAGGGGATCAAATAGACGACCACCTTCTGACTATCGGCGCTAGA
. : . : . : . : . : . :
rJMFF051L10+ GGGGTAGTATTTTAGCTTTGGACTTCTCAGTTTAACCTTTGTATCTTTGAATTTGATGTT
rJMFF020C18+ GGGGTAGTATTTTAGCTTTGGACTTCTCAGTTTAACCTTTGTAGCTTTGAATTTGATGTT
rJMFF010I11+ GGGGTAGTATTTTAGCTTTGGACTTCTCAGTTTAACCTTTGTAGCTTTGAATTTGATGTT
____________________________________________________________
consensus GGGGTAGTATTTTAGCTTTGGACTTCTCAGTTTAACCTTTGTAGCTTTGAATTTGATGTT
. : . : . : . : . : . :
rJMFF051L10+ ACATCAACTCACCAAGCAGATGTATGGAGCCAGGGGAGGATGGATCATCAGTGTTGCCTG
rJMFF020C18+ ACATCAACTCACCAAGCAGATGTATGGAGCCAGGGGAGGATGGATCATCAGTGTTGCCTG
rJMFF010I11+ ACATCAACTCACCAAGCAGATGTATGGAGCCAGGGGAGGATGGATCATCAGTGTTGCCTG
____________________________________________________________
consensus ACATCAACTCACCAAGCAGATGTATGGAGCCAGGGGAGGATGGATCATCAGTGTTGCCTG
. : . : . : . : . : . :
rJMFF051L10+ GAGCAATTGCTTGCCGATCTGTTTTGTGCTTAGCTTTGTAATTTGTACCATAGTGTCTCA
rJMFF020C18+ GAGCAATTGCTTGCCGATCTGTTTTGTGCTTAGCTTTGTAATTTGTACCATAGTGTCTCA
rJMFF010I11+ GAGCAATTGCTTGCCGATCTGTTTTGTGCTTAGCTTTGTAATTTGTACCATAGTGTCTCA
____________________________________________________________
consensus GAGCAATTGCTTGCCGATCTGTTTTGTGCTTAGCTTTGTAATTTGTACCATAGTGTCTCA
. : . : . : . : . : . :
rJMFF051L10+ TTACCTCATTATTTTTATGTTATATTTGTTTTTTTCTAAAGATATAAATTTAATGTACTT
rJMFF020C18+ TTACCTCATTATTTTTATGTTATATTTGTTTTTTTCTAAAGATATAAATTTAATGTACTT
rJMFF010I11+ TTACCTCATTATTTTTATGTTATATTTGTTTTTTTCTAAAGATATAAATTTAATGTACTT
____________________________________________________________
consensus TTACCTCATTATTTTTATGTTATATTTGTTTTTTTCTAAAGATATAAATTTAATGTACTT
. : . : . : . : . : . :
rJMFF051L10+ CAATTTGTTGTAACCGGTTACTGATTGACGGGAAAGGTTGTAATCTTGGATAAAAGTTTT
rJMFF020C18+ CAATTTGTTGTAACCGGTTACTGATTGACGGGAAAGGTTGTAATCTTGGATAAAAGTTTT
rJMFF010I11+ CAATTTGTTGTAACCGGTTACTGATTGACGGGAAAGGTTGTAATCTTGGATAAAAGTTTT
____________________________________________________________
consensus CAATTTGTTGTAACCGGTTACTGATTGACGGGAAAGGTTGTAATCTTGGATAAAAGTTTT
. : . : . : . : . : . :
rJMFF051L10+ TGT
rJMFF020C18+ TGTATTCCGTTGAATCATT
rJMFF010I11+ TGTATTCCGTTGAATCATTTGAACCAATTGTTAGTTTGTTATGGGAATGAGAAGCGAGCA
____________________________________________________________
consensus TGTATTCCGTTGAATCATTTGAACCAATTGTTAGTTTGTTATGGGAATGAGAAGCGAGCA