Contig 010995:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006F02Sequence546007983 (8)715010995 (9)ref|XP_009796557.1|2e-27PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMFF010H12Sequence583007983 (8)780010995 (9)dbj|BAH20382.1|1e-41AT2G47900 [Arabidopsis thaliana]
JMFF017L11Sequence738010995 (9)ref|XP_009587286.1|3e-63PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis]
JMFF040E04Sequence526007983 (8)ref|XP_010506830.1|7e-06PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506668010995 (9)ref|XP_009796557.1|2e-26PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMFF046B11Sequence565007983 (8)407010995 (9)
JMSF025D10Sequence675007983 (8)ref|XP_010506830.1|8e-09PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506814010995 (9)ref|XP_009587286.1|2e-74PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis]
JMSF037G11Sequence672007983 (8)ref|XP_010506830.1|2e-05PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506746010995 (9)ref|XP_009796557.1|2e-120PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMSF047D14Sequence673007983 (8)ref|XP_010506830.1|2e-05PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506733010995 (9)ref|XP_009796557.1|2e-53PREDICTED: tubby-like F-box protein 3 [Nicotiana sylvestris]
JMSF051N16Sequence669007983 (8)ref|XP_010506830.1|7e-09PREDICTED: tubby-like F-box protein 3 isoform X1 [Camelina sativa] ref|XP_010506725010995 (9)ref|XP_009587286.1|1e-33PREDICTED: tubby-like F-box protein 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF037G11+               GGAGCCAAGGTCACTAAATGCCATTCTACTACCCGGTTGGTGGGAGCAAAACAAG
                      ____________________________________________________________
consensus                  GGAGCCAAGGTCACTAAATGCCATTCTACTACCCGGTTGGTGGGAGCAAAACAAG
 
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rJMSF037G11+          TCTCTCCAAGTATACCTGCCGGAAACTATCCTGTAGCTCACATTTCTTATGAATTGAATG
                      ____________________________________________________________
consensus             TCTCTCCAAGTATACCTGCCGGAAACTATCCTGTAGCTCACATTTCTTATGAATTGAATG
 
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rJMSF037G11+          TCCTGGGTTCTAGGGGACCGAGGAGGATGCAATGTGCCATGGACGCAATCCCTGCTTCAT
                      ____________________________________________________________
consensus             TCCTGGGTTCTAGGGGACCGAGGAGGATGCAATGTGCCATGGACGCAATCCCTGCTTCAT
 
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rJMSF037G11+          CTGTTGAACCAGGAGGCGTGGCCCCGACACAAACGGAATTCCTTCCTGTCAACATAGATT
rJMSF025D10+                                CCCGACACNAACGGNATTCCTTCCTGTCAACATAGATT
                      ____________________________________________________________
consensus             CTGTTGAACCAGGAGGCGTGGCCCCGACACAAACGGAATTCCTTCCTGTCAACATAGATT
 
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rJMSF037G11+          CCTTCTCCACTTTTCCATTTTTCCGATCAAAATCAAACCGTATGGATAACTTCCAATCCG
rJMSF025D10+          CCTTCTCCACTTTTCCATTTTTCCGATCAAAATCAAACCGTATGGATAACTTCCAATCCG
rJMFF017L11+                        CCATTTTTCCGATCAAAATCAAACCGTATGGATAACTTCCAACCCG
                      ____________________________________________________________
consensus             CCTTCTCCACTTTTCCATTTTTCCGATCAAAATCAAACCGTATGGATAACTTCCAATCCG
 
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rJMSF037G11+          GACCTCTATCGGCTCAGAAAGACGAAATTCTAACTCTGAAGAACAAGGCTCCAGGGTGGC
rJMSF025D10+          GACCTCTATCGGCTCAGAAAGACGAAATTCTAACTTTGAAGAACAAGGCTCCAGGGTGGC
rJMFF017L11+          GACCTCTATCGGCTCAGAAAGAGGAAATTCTAACTCTGAAGAACAAGGCTCCAGGGTGGC
rJMSF047D14+                     GCTCAGAAAGACGAAATTCTAACTCTGAAGAACAAGGCTCCAGGGTGGC
                      ____________________________________________________________
consensus             GACCTCTATCGGCTCAGAAAGACGAAATTCTAACTCTGAAGAACAAGGCTCCAGGGTGGC
 
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rJMSF037G11+          ACGAGCAACTGCAGTGCTGGTGTCTTAACTTCAATGGACGAGTAACGGTTGCTTCAGTTA
rJMSF025D10+          ACGAGCAACTGCAGTGCTGGTGTCTTAACTTCAATGGACGAGTAACGGTTGCTTCAGTTA
rJMFF017L11+          ACGAGCAACTGCAGTGCTGGTGTCTTAACTTCAATGGACGAGTAACGGTTGCTTCAGTTA
rJMSF047D14+          ACGAGCAACTGCAGTGCTGGTGTCTTAACTTCAATGGACGAGTAACGGTTGCTTCAGTTA
rJMSF051N16+                                       TTCAATGGACGAGTAACGGTTGCTTCAGTTA
rJMFF006F02+                                                                CAGTTA
rJMFF010H12+          ACGAGCAACTGCAGTGCTGGTGTCTTAACTTCAATGGACGAGTAACGGTTGCTTCAGTTA
                      ____________________________________________________________
consensus             ACGAGCAACTGCAGTGCTGGTGTCTTAACTTCAATGGACGAGTAACGGTTGCTTCAGTTA
 
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rJMSF037G11+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMSF025D10+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMFF017L11+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMSF047D14+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMSF051N16+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMFF040E04+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMFF006F02+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
rJMFF010H12+          AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
                      ____________________________________________________________
consensus             AAAACTTCCAGCTGGTTGCTTCTATGGGAGACGGGGTCGCACCAGAGCACGAAAACGTTA
 
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rJMSF037G11+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMSF025D10+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMFF017L11+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMSF047D14+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMSF051N16+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMFF040E04+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMFF006F02+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
rJMFF010H12+          TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
                      ____________________________________________________________
consensus             TTCTTCAATTCGGGAAAGTTGGAAAGGACGTCTTCACCATGGATTATCAGTACCCCATCT
 
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rJMSF037G11+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMSF025D10+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMFF017L11+          CTGCGTTCCAGGCATTCGCCATNTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMSF047D14+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMSF051N16+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMFF040E04+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMFF006F02+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
rJMFF010H12+          CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
                      ____________________________________________________________
consensus             CTGCGTTCCAGGCATTCGCCATCTGCCTCAGTAGCTTCGACACCAAAATTGCTTGCGAGT
 
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rJMSF037G11+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
rJMSF025D10+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
rJMFF017L11+          GATAATCAGGTGGGTTCTGCACTTNTGNTAATATATAGCCGATACCATAATGGATGCTTT
rJMFF046B11+                                             TAGCCGATACCATAATGGATGCTTT
rJMSF047D14+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
rJMSF051N16+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
rJMFF040E04+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
rJMFF006F02+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
rJMFF010H12+          GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
                      ____________________________________________________________
consensus             GATAATCAGGTGGGTTCTGCACTTCTGCTAATATATAGCCGATACCATAATGGATGCTTT
 
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rJMSF037G11+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMSF025D10+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMFF017L11+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMFF046B11+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMSF047D14+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMSF051N16+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMFF040E04+          TCTCGACTCTGGACGTGAATTTTGTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMFF006F02+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
rJMFF010H12+          TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
                      ____________________________________________________________
consensus             TCTCGACTCTGGACGTGAATTTTTTTACTTGGAATGCTTGTAATACATTGTAACGTTTAA
 
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rJMSF037G11+          ACATCCCGAATTCCTCAAGGCTTTAAGTTT                              
rJMSF025D10+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMFF017L11+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMFF046B11+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTNGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMSF047D14+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMSF051N16+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMFF040E04+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMFF006F02+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
rJMFF010H12+          ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
                      ____________________________________________________________
consensus             ACATCCCGAATTCCTCAAGGCTTTAAGTTTTGTAGCCGTGTAGACAATTTATGAAAAAGG
 
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rJMSF025D10+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMFF017L11+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMFF046B11+          ACTGGGCACATCTAATTAATAGTGGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMSF047D14+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMSF051N16+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMFF040E04+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMFF006F02+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
rJMFF010H12+          ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
                      ____________________________________________________________
consensus             ACTGGGCACATCTAATTAATAGTTGTCGTCAAGTCTCTCGGAGTGTGTTTCTTGATTGTA
 
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rJMSF025D10+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMFF017L11+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMFF046B11+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMSF047D14+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMSF051N16+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMFF040E04+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMFF006F02+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
rJMFF010H12+          GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
                      ____________________________________________________________
consensus             GCAGGTGCCTGAAGATGCATTAAGAGCTGCTCAGGAACACAGATGCACGAAGGTCATATG
 
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rJMSF025D10+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMFF017L11+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMFF046B11+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMSF047D14+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMSF051N16+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMFF040E04+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMFF006F02+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
rJMFF010H12+          CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
                      ____________________________________________________________
consensus             CTATCCAGATTAATGTTGTTGTCTTGATCCTCGTTTTGCTGTCTGGTTTGCCTTGTGTCT
 
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rJMSF025D10+          TTTCTCCATCTTCTGTAAATAC                                      
rJMFF017L11+          TTTCTCCATCTTNTGTAAATACA                                     
rJMFF046B11+          TTTCTCCATCTTCTGTAAATACATGGGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
rJMSF047D14+          TTTCTCCATCTTCTGTAAATACATGGGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
rJMSF051N16+          TTTCTCCATCTTCTGTAAATACATGGGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
rJMFF040E04+          TTTCTCCATCTTCTGTAAATACATGTGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
rJMFF006F02+          TTTCTCCATCTTCTGTAAATACATGGGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
rJMFF010H12+          TTTCTCCATCTTCTGTAAATACATGGGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
                      ____________________________________________________________
consensus             TTTCTCCATCTTCTGTAAATACATGGGGACGAGATTTCTTTGTTTTTACTGTAGTTTCCA
 
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rJMFF046B11+          GTTTTCA                                                     
rJMSF047D14+          GTTTTCAGATGGTGTGGCTTTTAT                                    
rJMSF051N16+          GTTTTCAGATGGTGTGGCTTTTATGTTTTACAGCATGGGTATTCATTGCCTTGCAGATCT
rJMFF040E04+          GTTTTCAGATGGTGTGGCTTTTATGTTTTACAGCATGGGTATTCATTGCCTTGCAGATCT
rJMFF006F02+          GTTTTCAGATGGTGTGGCTTTTATGTTTTACAGCATGGGTATTCATTGCCTTGCAGATCT
rJMFF010H12+          GTTTTCAGATGGTGTGGCTTTTATGTTTTACAGCATGGGTATTCATTGCCTTGCAGATCT
                      ____________________________________________________________
consensus             GTTTTCAGATGGTGTGGCTTTTATGTTTTACAGCATGGGTATTCATTGCCTTGCAGATCT
 
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rJMSF051N16+          TTTACAGATTGGTGAATTTCTTGGGACTATGCTT                          
rJMFF040E04+          TTTACAGA                                                    
rJMFF006F02+          TTTACAGATTGGTGAATTTCTTGGGACTATGCTTTTCT                      
rJMFF010H12+          TTTACAGATTGGTGAATTTCTTGGGACTATGCTTTTCTCTTAACTTTTTCTTTATAAAAA
                      ____________________________________________________________
consensus             TTTACAGATTGGTGAATTTCTTGGGACTATGCTTTTCTCTTAACTTTTTCTTTATAAAAA