| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001M13 | Sequence | 486 | 004436 (5) | ref|XP_011073578.1| | 4e-15 | PREDICTED: probable inactive receptor kinase At4g23740 [Sesamum indicum] | 677 | 010980 (5) | gb|KDP25339.1| | 5e-81 | hypothetical protein JCGZ_20495 [Jatropha curcas] |
| JMFF003L15 | Sequence | 535 | 004436 (5) | ref|XP_011073578.1| | 9e-53 | PREDICTED: probable inactive receptor kinase At4g23740 [Sesamum indicum] | 695 | 010980 (5) | gb|KDP25339.1| | 1e-81 | hypothetical protein JCGZ_20495 [Jatropha curcas] |
| JMFF004I18 | Sequence | 662 | 004436 (5) | ref|XP_011073578.1| | 1e-49 | PREDICTED: probable inactive receptor kinase At4g23740 [Sesamum indicum] | 704 | 010980 (5) | gb|KDP25339.1| | 1e-88 | hypothetical protein JCGZ_20495 [Jatropha curcas] |
| JMFF007K21 | Sequence | 575 | 004436 (5) | ref|XP_006343895.1| | 2e-61 | PREDICTED: probable inactive receptor kinase At4g23740-like [Solanum tuberosum] | 699 | 010980 (5) | gb|KDP25339.1| | 1e-81 | hypothetical protein JCGZ_20495 [Jatropha curcas] |
| JMFF027F19 | Sequence | 402 | 004436 (5) | ref|XP_004245544.1| | 9e-18 | PREDICTED: probable inactive receptor kinase At4g23740 [Solanum lycopersicum] | 655 | 010980 (5) | gb|KDP25339.1| | 9e-73 | hypothetical protein JCGZ_20495 [Jatropha curcas] |
This contig is upended
. : . : . : . : . : . :
rJMFF004I18+ CGGGA
____________________________________________________________
consensus CGGGA
. : . : . : . : . : . :
rJMFF001M13+ TGAACTCAAAGCAATACGGGTGCGTATCCGATGTGG
rJMFF004I18+ ACATCAAGTCCTCGAACATCTTTCTGAACTCAAAGCAATACGGGTGCGTATCCGATGTGG
rJMFF003L15+ TGAACTCAAAGCAATACGGGTGCGTATCCGATGTGG
rJMFF007K21+ TGAACTCAAAGCAATACGGGTGCGTATCCGATGTGG
____________________________________________________________
consensus ACATCAAGTCCTCGAACATCTTTCTGAACTCAAAGCAATACGGGTGCGTATCCGATGTGG
. : . : . : . : . : . :
rJMFF001M13+ GTCTGTCAGCAATAATGAGCTCGTTGGCTCCGCCAGTAGCTCGTGCTGCTGGGTACCGAG
rJMFF004I18+ GTCTGTCAGCAATAATGAGCTCGTTGGCTCCGCCAGTAGCTCGTGCTGCTGGGTACCGAG
rJMFF027F19+ TCTGTCAGCAATAATGAGCTCGTTGGCTCCGCCAGTAGCTCGTGCTGCTGGGTACCGAG
rJMFF003L15+ GTCTGTCAGCAATAATGAGCTCGTTGGCTCCGCCAGTAGCTCGTGCTGCTGGGTACCGAG
rJMFF007K21+ GTCTGTCAGCAATAATGAGCTCGTTGGCTCCGCCAGTAGCTCGTGCTGCTGGGTACCGAG
____________________________________________________________
consensus GTCTGTCAGCAATAATGAGCTCGTTGGCTCCGCCAGTAGCTCGTGCTGCTGGGTACCGAG
. : . : . : . : . : . :
rJMFF001M13+ CCCCAGAAGTGGTGGACACGCGAAAAGCAGCACACCCTTCGGACGTCTACAGCTTTGGAG
rJMFF004I18+ CCCCAGAAGTGGTGGACACGCGAAAAGCAGCACACCCTTCGGACGTCTACAGCTTTGGAG
rJMFF027F19+ CCCCAGAAGTGGTGGACACGCGAAAAGCAGCACACCCTTCGGACGTCTACAGCTTTGGAG
rJMFF003L15+ CCCCAGAAGTGGTGGACACGCGAAAAGCAGCACACCCTTCGGACGTCTACAGCTTTGGAG
rJMFF007K21+ CCCCAGAAGTGGTGGACACGCGAAAAGCAGCACACCCTTCGGACGTCTACAGCTTTGGAG
____________________________________________________________
consensus CCCCAGAAGTGGTGGACACGCGAAAAGCAGCACACCCTTCGGACGTCTACAGCTTTGGAG
. : . : . : . : . : . :
rJMFF001M13+ TGCTGTTGCTCGAGCTCCTGACCGGGAAATCCCCCGTCCACACCACGAGCGGGGACGAGA
rJMFF004I18+ TGCTGTTGCTCGAGCTCCTGACCGGGAAATCCCCCGTCCACACCACGAGCGGGGACGAGA
rJMFF027F19+ TGCTGTTGCTCGAGCTCCTGACCGGGAAATCCCCCGTCCACACCACGAGCGGGGACGAGA
rJMFF003L15+ TGCTGTTGCTCGAGCTCCTGACCGGGAAATCCCCCGTCCACACCACGAGCGGGGACGAGA
rJMFF007K21+ TGCTGTTGCTCGAGCTCCTGACCGGGAAATCCCCCGTCCACACCACGAGCGGGGACGAGA
____________________________________________________________
consensus TGCTGTTGCTCGAGCTCCTGACCGGGAAATCCCCCGTCCACACCACGAGCGGGGACGAGA
. : . : . : . : . : . :
rJMFF001M13+ TCATCCACCTGGTGCGGTGGGTGCACTCGGTGGTCCGGGAGGAGTGGACTGCTGAAGTGT
rJMFF004I18+ TCATCCACCTGGTGCGGTGGGTGCACTCGGTGGTCCGGGAGGAGTGGACTGCTGAAGTGT
rJMFF027F19+ TCATCCACCTGGTGCGGTGGGTGCACTCGGTGGTCCGGGAGGAGTGGACTGCTGAAGTGT
rJMFF003L15+ TCATCCACCTGGTGCGGTGGGTGCACTCGGTGGTCCGGGAGGAGTGGACTGCTGAAGTGT
rJMFF007K21+ TCATCCACCTGGTGCGGTGGGTGCACTCGGTGGTCCGGGAGGAGTGGACTGCTGAAGTGT
____________________________________________________________
consensus TCATCCACCTGGTGCGGTGGGTGCACTCGGTGGTCCGGGAGGAGTGGACTGCTGAAGTGT
. : . : . : . : . : . :
rJMFF001M13+ TTGATGTGAAGCTGCTGAAGATCCCAGACATAGAGGAAGAGATGGTGGAGATGTTGCAGA
rJMFF004I18+ TTGATGTGAAGCTGCTGAAGATCCCAGACATAGAGGAAGAGATGGTGGAGATGTTGCAGA
rJMFF027F19+ TTGATGTGAAGCTGCTGAAGATCCCAGACATAGAGGAAGAGATGGTGGAGATGTTGCAGA
rJMFF003L15+ TTGATGTGAAGCTGCTGAAGATCCCAGACATAGAGGAAGAGATGGTGGAGATGTTGCAGA
rJMFF007K21+ TTGATGTGAAGCTGCTGAAGATCCCAGACATAGAGGAAGAGATGGTGGAGATGTTGCAGA
____________________________________________________________
consensus TTGATGTGAAGCTGCTGAAGATCCCAGACATAGAGGAAGAGATGGTGGAGATGTTGCAGA
. : . : . : . : . : . :
rJMFF001M13+ TTGCTCTGTCGTGTGTGGTCAGGATGCCGGATCAGAGACCCAAAATGCCAGAAGTTGTTA
rJMFF004I18+ TTGCTCTGTCGTGTGTGGTCAGGATGCCGGATCAGAGACCCAAAATGCCAGAAGTTGTTA
rJMFF027F19+ TTGCTCTGTCGTGTGTGGTCAGGATGCCGGATCAGAGACCCAAAATGCCAGAAGTTGTTA
rJMFF003L15+ TTGCTCTGTCGTGTGTGGTCAGGATGCCGGATCAGAGACCCAAAATGCCAGAAGTTGTTA
rJMFF007K21+ TTGCTCTGTCGTGTGTGGTCAGGATGCCGGATCAGAGACCCAAAATGCCAGAAGTTGTTA
____________________________________________________________
consensus TTGCTCTGTCGTGTGTGGTCAGGATGCCGGATCAGAGACCCAAAATGCCAGAAGTTGTTA
. : . : . : . : . : . :
rJMFF001M13+ AAATGATCGAAGGCGTGAGGAGGAACGATCATTTGGAGAACCGGAGATCTTGTGAAAATG
rJMFF004I18+ AAATGATCGAAGGCGTGAGGAGGAACGATCATTTGGAGAACCGGAGATCTTGTGAAAATG
rJMFF027F19+ AAATGATCGAAGGCGTGAGGAGGAACGATCATTTGGAGAACCGGAGATCTTGTGAAAATG
rJMFF003L15+ AAATGATCGAAGGCGTGAGGAGGAACGATCATTTGGAGAACCGGAGATCTTGTGAAAATG
rJMFF007K21+ AAATGATCGAAGGCGTGAGGAGGAACGATCATTTGGAGAACCGGAGATCTTGTGAAAATG
____________________________________________________________
consensus AAATGATCGAAGGCGTGAGGAGGAACGATCATTTGGAGAACCGGAGATCTTGTGAAAATG
. : . : . : . : . : . :
rJMFF001M13+ GCGCATCGAGGCTGTCACCATCCTCGATTGAGCAGGAATGCTCTTAGAATCTGCAGAATT
rJMFF004I18+ GCGCATCGAGGCTGTCACCATCCTCGATTGAGCAGGAATGCTCTTAGAATCTGCAGAATT
rJMFF027F19+ GCGCATCGAGGCTGTCACCATCCTCGATTGAGCAGGAATGCTCTTAGAATCTGCAGAATT
rJMFF003L15+ GCGCATCGAGGCTGTCACCATCCTCGATTGAGCAGGAATGCTCTTAGAATCTGCAGAATT
rJMFF007K21+ GCGCATCGAGGCTGTCACCATCCTCGATTGAGCAGGAATGCTCTTAGAATCTGCAGAATT
____________________________________________________________
consensus GCGCATCGAGGCTGTCACCATCCTCGATTGAGCAGGAATGCTCTTAGAATCTGCAGAATT
. : . : . : . : . : . :
rJMFF001M13+ GAATGAAGAAGTTGAAGTGATTCATGTCCCACATTGTTGCCATCTAGCTTTAATTTTAAT
rJMFF004I18+ GAATGAAGAAGTTGAAGTGATTCATGTCCCACATTGTTGCCATCTAGCTTTAATTTTAAT
rJMFF027F19+ GAATGAAGAAGTTGAAGTGATTCATGTCCCACATTGTTGCCATCTAGCTTTAATTTTAAT
rJMFF003L15+ GAATGAAGAAGTTGAGGTGATTCATGTCCCACATTGTTGCCATCTAGCTTTAATTTTAAT
rJMFF007K21+ GAATGAAGAAGTTGAGGTGATTCATGTCCCACATTGTTGCCATCTAGCTTTAATTTTAAT
____________________________________________________________
consensus GAATGAAGAAGTTGAAGTGATTCATGTCCCACATTGTTGCCATCTAGCTTTAATTTTAAT
. : . : . : . : . : . :
rJMFF001M13+ CTGATTCCAGCGGTGTTTAAATGTATATTCACTATCTCAGTGGAGTCCGGGGATTCTTCT
rJMFF004I18+ CTGATTCCAGCGGTGTTTAAATGTATATTCACTATCTCAGTGGAGTCCGGGGATTCTTCT
rJMFF027F19+ CTGATTCCAGCGGTGTTTAAATGTATATTCACTATCTCAGTGGAGTCCGGGGATTCTTCT
rJMFF003L15+ CTGATTCCAGCGGTGTTTAAATGTATATTCACTATCTCAGTGGAGTCCGGGGATTCTTCT
rJMFF007K21+ CTGATTCCAGCGGTGTTTAAATGTATATTCACTATCTCAGTGGAGTCCGGGGATTCTTCT
____________________________________________________________
consensus CTGATTCCAGCGGTGTTTAAATGTATATTCACTATCTCAGTGGAGTCCGGGGATTCTTCT
. : . : . : . : . : . :
rJMFF001M13+ TTGTAATAATCTGATGATCACAGTACAGTAAT
rJMFF004I18+ TTGTAATAATCTGATGATCACAGTACAGTAAT
rJMFF027F19+ TTGTAATAATCTGATGATCACAGTACAGTAATTGCAGAGATGGACTTGTTAAGCTA
rJMFF003L15+ TTGTAATAATCTGATGATCACAGTACAGTAATTGCAGAGATGGACTTGTTAAGCTA
rJMFF007K21+ TTGTAATAATCTGATGATCACAGTACAGTAATTGCAGAGATGGACTTGTTAAGCTATGAT
____________________________________________________________
consensus TTGTAATAATCTGATGATCACAGTACAGTAATTGCAGAGATGGACTTGTTAAGCTATGAT