Contig 010968:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D08Sequence503010968 (2)ref|XP_010535069.1|287PREDICTED: 40S ribosomal protein S18 isoform X1 [Tarenaya hassleriana]676010968 (2)ref|XP_010535069.1|276PREDICTED: 40S ribosomal protein S18 isoform X1 [Tarenaya hassleriana]

Alignment

This contig is upended


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rJMFF004D08- TGAAATCATGCCTGCT
                      ____________________________________________________________
consensus TGAAATCATGCCTGCT
 
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rJMFF004D08- TGACAAAAACATGGAAGCTCATGCTTTTAGCTTTAAAAAGTACTAGTACTAAATACTAAT
                      ____________________________________________________________
consensus TGACAAAAACATGGAAGCTCATGCTTTTAGCTTTAAAAAGTACTAGTACTAAATACTAAT
 
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rJMFF004D08- ATCACAAATAAAAGATATAAATATATTCTAAAACAAAACCATCCATGATTCGAATGCAAC
                      ____________________________________________________________
consensus ATCACAAATAAAAGATATAAATATATTCTAAAACAAAACCATCCATGATTCGAATGCAAC
 
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JMFF004D08+ CCCCTACGCCCAGTTGTCTTGGTG
rJMFF004D08- CAAAATCAACGCTTCTTCGAGACACCAACAGTCTTTCCCCTACGCCCAGTTGTCTTGGTG
                      ____________________________________________________________
consensus CAAAATCAACGCTTCTTCGAGACACCAACAGTCTTTCCCCTACGCCCAGTTGTCTTGGTG
 
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JMFF004D08+ TGCTGTCCACGTACACGGAGCCCCCAGTAGTGTCGGAGACCACGGTGGTTTCTGATTTTC
rJMFF004D08- TGCTGTCCACGTACACGGAGCCCCCAGTAGTGTCGGAGACCACGGTGGTTTCTGATTTTC
                      ____________________________________________________________
consensus TGCTGTCCACGTACACGGAGCCCCCAGTAGTGTCGGAGACCACGGTGGTTTCTGATTTTC
 
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JMFF004D08+ TTCAGGCGTTCAAGGTCATCCCTAAGCTTCATATCCAATGCATTGGAGACAACCTGTGAA
rJMFF004D08- TTCAGGCGTTCAAGGTCATCCCTAAGCTTCATATCCAATGCATTGGAGACAACCTGTGAA
                      ____________________________________________________________
consensus TTCAGGCGTTCAAGGTCATCCCTAAGCTTCATATCCAATGCATTGGAGACAACCTGTGAA
 
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JMFF004D08+ TAGTTACCATCCTTATAGTCCTTCTGCCTGTTCAAAAACCAGTCAGGGACCTTGAACTGG
rJMFF004D08- TAGTTACCATCCTTATAGTCCTTCTGCCTGTTCAAAAACCAGTCAGGGACCTTGAACTGG
                      ____________________________________________________________
consensus TAGTTACCATCCTTATAGTCCTTCTGCCTGTTCAAAAACCAGTCAGGGACCTTGAACTGG
 
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JMFF004D08+ CGAGGGTTTGCAACAACGGTCATCAAGTTATCAATTTCAGCAGCAGTAAGTTCCCCAGCC
rJMFF004D08- CGAGGGTTTGCAACAACGGTCATCAAGTTATCAATTTCAGCAGCAGTAAGTTCCCCAGCC
                      ____________________________________________________________
consensus CGAGGGTTTGCAACAACGGTCATCAAGTTATCAATTTCAGCAGCAGTAAGTTCCCCAGCC
 
. : . : . : . : . : . :
JMFF004D08+ CTTTTGTTCATGTCGATATCGGCTTTTTTGCAGCAGATATTGGCGAAGCGGCGACCAATA
rJMFF004D08- CTTTTGTTCATGTCGATATCGGCTTTTTTGCAGCAGATATTGGCGAAGCGGCGACCAATA
                      ____________________________________________________________
consensus CTTTTGTTCATGTCGATATCGGCTTTTTTGCAGCAGATATTGGCGAAGCGGCGACCAATA
 
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JMFF004D08+ CCTTTGATGGAAGTCATAGCAAACATAATCTTCTGCTTCCCATCGACATTGGTGTTCAGG
rJMFF004D08- CCTTTGATGGAAGTCATAGCAAACATAATCTTCTGCTTCCCATCGACATTGGTGTTCAGG
                      ____________________________________________________________
consensus CCTTTGATGGAAGTCATAGCAAACATAATCTTCTGCTTCCCATCGACATTGGTGTTCAGG
 
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JMFF004D08+ ATACGCAAAATGTGCTGGAAATCCTCGTTCGCGACCAGACTCATGATTATGGCTTTCTCT
rJMFF004D08- ATACGCAAAATGTGCTGGAAATCCTCGTTCGCGACCAGACTCATGATTATGGCTTTCTCT
                      ____________________________________________________________
consensus ATACGCAAAATGTGCTGGAAATCCTCGTTCGCGACCAGACTCATGATTATGGCTTTCTCT
 
. : . : . : . : . : . :
JMFF004D08+ CCCCTCTCTCGCTCTCCGCTGAACTGTATGCCTGAACTGTGAACGAA
rJMFF004D08- CCCCTCTCTCGCTCTCCGCTGAACTGTATGCCTGAACTGTGAACGAAAGGTTGGGGTTCC
                      ____________________________________________________________
consensus CCCCTCTCTCGCTCTCCGCTGAACTGTATGCCTGAACTGTGAACGAAAGGTTGGGGTTCC