| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003B01 | Sequence | 138 | 007813 (5) | ref|XP_002267459.1| | 2e-07 | PREDICTED: oxalate--CoA ligase-like [Vitis vinifera] | 711 | 010962 (5) | ref|XP_009601805.1| | 2e-77 | PREDICTED: 4-coumarate--CoA ligase-like 10 [Nicotiana tomentosiformis] |
| JMSF013M16 | Sequence | 427 | 007813 (5) | gb|AHM88425.1| | 9e-44 | 4CL13 [Fraxinus mandshurica] | 701 | 010962 (5) | ref|XP_009601805.1| | 2e-89 | PREDICTED: 4-coumarate--CoA ligase-like 10 [Nicotiana tomentosiformis] |
| JMSF013P24 | Sequence | 279 | 007813 (5) | gb|AHM88425.1| | 7e-23 | 4CL13 [Fraxinus mandshurica] | 674 | 010962 (5) | ref|XP_009601805.1| | 4e-84 | PREDICTED: 4-coumarate--CoA ligase-like 10 [Nicotiana tomentosiformis] |
| JMSF044B05 | Sequence | 759 | 007813 (5) | ref|XP_004234395.1| | 2e-99 | PREDICTED: oxalate--CoA ligase-like [Solanum lycopersicum] | 732 | 010962 (5) | ref|XP_009601805.1| | 1e-103 | PREDICTED: 4-coumarate--CoA ligase-like 10 [Nicotiana tomentosiformis] |
| JMSF051P24 | Sequence | 648 | 007813 (5) | gb|AFP66956.1| | 2e-79 | acyl-CoA synthetase, partial [Capsicum annuum] | 722 | 010962 (5) | ref|XP_009601805.1| | 1e-98 | PREDICTED: 4-coumarate--CoA ligase-like 10 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF044B05+ AA
____________________________________________________________
consensus AA
. : . : . : . : . : . :
rJMSF044B05+ TTCTGGATGAGAATGGTGTAGCACAGGAATTTNGGGGCTCATGGGGGAGGTTTGCATCAG
rJMSF051P24+ AG
____________________________________________________________
consensus TTCTGGATGAGAATGGTGTAGCACAGGAATTTNGGGGCTCATGGGGGAGGTTTGCATCAG
. : . : . : . : . : . :
rJMSF044B05+ GGGACCAAATGTGACTAAAGGGTACAAAAACAATCCTGAAGCCAACAAATCCGCTTTTCA
rJMSF051P24+ GGGACCAAATGTGACTAANGGGTACAAAAACAATCCTGAAGCCAACAAATCCGCTTTTCA
rJMSF013P24+ TTTCA
rJMSF013M16+ ATCCTGAAGCCAACAAATCCGCTTTTCA
____________________________________________________________
consensus GGGACCAAATGTGACTAAAGGGTACAAAAACAATCCTGAAGCCAACAAATCCGCTTTTCA
. : . : . : . : . : . :
rJMSF044B05+ ATTTGGGTGGTTTCATACTGGAGACCTTGGATACTTAGATGCCCATGGATATTTGCATCT
rJMSF051P24+ ATTTGGGTGGTTTCATACTGGAGACCTTGGATACTTAGATGCCCATGGATATTTGCATCT
rJMSF013P24+ ATTTGGGTGGTTTCATACTGGAGACCTTGGATACTTAGATGCCCATGGATATTTGCATCT
rJMSF013M16+ ATTTGGGTGGTTTCATACTGGAGACCTTGGATACTTAGATGCCCATGGATATTTGCATCT
rJMFF003B01+ GTTTCATACTGGAGACCTTGGATACTTAGATGCCCATTGATATTTGCATCT
____________________________________________________________
consensus ATTTGGGTGGTTTCATACTGGAGACCTTGGATACTTAGATGCCCATGGATATTTGCATCT
. : . : . : . : . : . :
rJMSF044B05+ AGTTGGTAGGATCAAGCAGTTAATCAACCGTGGAGGTGAGAAAATATCACCCATTGAAGT
rJMSF051P24+ AGTTGGTAGGATCAAGCAGTTAATCAACCGTGGAGGTGAGAAAATATCACCCATTGAAGT
rJMSF013P24+ AGTTGGTAGGATCAAGCAGTTAATCAACCGTGGAGGTGAGAAAATATCACCCATTGAAGT
rJMSF013M16+ AGTTGGTAGGATCAAGCAGTTAATCAACCGTGGAGGTGAGAAAATATCACCCATTGAAGT
rJMFF003B01+ AGTTGGTAGGATCAAGCAGTTAATCAACCGTGGAGGTGAGAAAATATCACCCATTGAAGT
____________________________________________________________
consensus AGTTGGTAGGATCAAGCAGTTAATCAACCGTGGAGGTGAGAAAATATCACCCATTGAAGT
. : . : . : . : . : . :
rJMSF044B05+ GGATGCTGTGCTCATTTCTCATCCAGAGGTTGCTCAAGCTGTTGCTTTTGGAGTTCCTGA
rJMSF051P24+ GGATGCTGTGCTCATTTCTCATCCAGAGGTTGCTCAAGCTGTTGCTTTTGGAGTTCCTGA
rJMSF013P24+ GGATGCTGTGCTCATTTCTCATCCAGAGGTTGCTCAAGCTGTTGCTTTTGGAGTTCCTGA
rJMSF013M16+ GGATGCTGTGCTCATTTCTCATCCAGAGGTTGCTCAAGCTGTTGCTTTTGGAGTTCCTGA
rJMFF003B01+ GGATGCTGTGCTCATTTCTCATCCAGAGGTTGCTCAAGCTGTTGCTTTTGGAGTTCCTGA
____________________________________________________________
consensus GGATGCTGTGCTCATTTCTCATCCAGAGGTTGCTCAAGCTGTTGCTTTTGGAGTTCCTGA
. : . : . : . : . : . :
rJMSF044B05+ TGACAAGTATGGTGAAGAGATAAACTGTGCAATCATTCCAAGTGAAGGATCAAGCATTAA
rJMSF051P24+ TGACAAGTATGGTGAAGAGATAAACTGTGCAATCATTCCAAGTGAAGGATCAAGCATTAA
rJMSF013P24+ TGACAAGTATGGTGAAGAGATAAACTGTGCAATCATTCCAAGTGAAGGATCAAGCATTAA
rJMSF013M16+ TGACAAGTATGGTGAAGAGATAAACTGTGCAATCATTCCAAGTGAAGGATCAAGCATTAA
rJMFF003B01+ TGACAAGTATGGTGAAGAGATAAACTGTGCAATCATTCCAAGTGAAGGATCAAGCATTAA
____________________________________________________________
consensus TGACAAGTATGGTGAAGAGATAAACTGTGCAATCATTCCAAGTGAAGGATCAAGCATTAA
. : . : . : . : . : . :
rJMSF044B05+ CGAAGAGGAGGTGTTGAGATTCTGCAAGAAAAACCTTGCAGCCTTCAAGGTTCCAAAGAA
rJMSF051P24+ CGAAGAGGAGGTGTTGAGATTCTGCAAGAAAAACCTTGCAGCCTTCAAGGTTCCAAAGAA
rJMSF013P24+ CGAAGAGGAGGTGTTGAGATTCTGCAAGAAAAACCTTGCAGCCTTCAAGGTTCCAAAGAA
rJMSF013M16+ CGAAGAGGAGGTGTTGAGATTCTGCAAGAAAAACCTTGCAGCCTTCAAGGTTCCAAAGAA
rJMFF003B01+ CGAAGAGGAGGTGTTGAGATTCTGCAAGAAAAACCTTGCAGCCTTCAAGGTTCCAAAGAA
____________________________________________________________
consensus CGAAGAGGAGGTGTTGAGATTCTGCAAGAAAAACCTTGCAGCCTTCAAGGTTCCAAAGAA
. : . : . : . : . : . :
rJMSF044B05+ GGTGTTCATAACAGATTCTCTCCCTAAAACTGCTACAGGCAAAATCCAGCGGAGAATTGT
rJMSF051P24+ GGTGTTCATAACAGATTCTCTCCCTAAAACTGCTACAGGCAAAATCCAGCGGAGAATTGT
rJMSF013P24+ GGTGTTCATAACAGATTCTCTCCCTAAAACTGCTACAGGCAAAATCCAGCGGAGAATTGT
rJMSF013M16+ GGTGTTCATAACAGATTCTCTCCCTAAAACTGCTACAGGCAAAATCCAGCGGAGAATTGT
rJMFF003B01+ GGTGTTCATAACAGATTCTCTCCCTAAAACTGCTACAGGCAAAATCCAGCGGAGAATTGT
____________________________________________________________
consensus GGTGTTCATAACAGATTCTCTCCCTAAAACTGCTACAGGCAAAATCCAGCGGAGAATTGT
. : . : . : . : . : . :
rJMSF044B05+ GGCAGAGCATTTCCTTGCACAAATCTCCATTGCCAAGCTCCCCAAGTTTGGTGCCTAAGA
rJMSF051P24+ GGCAGAGCATTTCCTTGCACAAATCTCCATTGCCAAGCTCCCCAAGTTTGGTGCCTAAGA
rJMSF013P24+ GGCAGAGCATTTCCTTGCACAAATCTCCATTGCCAAGCTCCCCAAGTTTGGTGCCTAAGA
rJMSF013M16+ GGCAGAGCATTTCCTTGCACAAATCTCCATTGCCAAGCTCCCCAAGTTTGGTGCCTAAGA
rJMFF003B01+ GGCAGAGCATTTCCTTGCACAAATCTCCATTGCCAAGCTCCCCAAGTTTGGTGCCTAAGA
____________________________________________________________
consensus GGCAGAGCATTTCCTTGCACAAATCTCCATTGCCAAGCTCCCCAAGTTTGGTGCCTAAGA
. : . : . : . : . : . :
rJMSF044B05+ AGATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAAG
rJMSF051P24+ AGATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAAG
rJMSF013P24+ AGATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAAG
rJMSF013M16+ AGATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAAG
rJMFF003B01+ AGATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAAG
____________________________________________________________
consensus AGATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAAG
. : . : . : . : . : . :
rJMSF044B05+ AAAATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAA
rJMSF051P24+ AAAATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAA
rJMSF013P24+ AAAATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAA
rJMSF013M16+ AAAATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAA
rJMFF003B01+ AAAATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAA
____________________________________________________________
consensus AAAATCAGAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACCTAAGAA
. : . : . : . : . : . :
rJMSF044B05+ GAAAATCAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACATTATATT
rJMSF051P24+ GAAAATCAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACATTATATT
rJMSF013P24+ GAAAATCAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACATTATATT
rJMSF013M16+ GAAAATCAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACATTATATT
rJMFF003B01+ GAAAATCAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACATTATATT
____________________________________________________________
consensus GAAAATCAGACTGTATTCCCAAACTGCCCTGTGGGAAGGGACATCATAGTACATTATATT
. : . : . : . : . : . :
rJMSF044B05+ ATGTATCCTA
rJMSF051P24+ ATGTATCCTATGAATAGATAGCTTGTTGCATCAAAATAGCAAACATTAATTCCT
rJMSF013P24+ ATGTATCCTATGAATAGATAGCTTGTTGCATCAAAATAGCAAACATTAATTCCTTGTTGG
rJMSF013M16+ ATGTATCCTATGAATAGATAGCTTGTTGCATCAAAATAGCAAACATTAATTCCTTGTTGG
rJMFF003B01+ ATGTATCCTATGAATAGATAGCTTGTTGCATCAAAATAGCAAACATTAATTCCTTGTTGG
____________________________________________________________
consensus ATGTATCCTATGAATAGATAGCTTGTTGCATCAAAATAGCAAACATTAATTCCTTGTTGG
. : . : . : . : . : . :
rJMSF013P24+ CTGTCTAGT
rJMSF013M16+ CTGTCTAGT
rJMFF003B01+ CTGTCTAGTATTTAGCTAAACATTATCCTGCAATATTTATTGTCTCTTTTAAGTATCTCT
____________________________________________________________
consensus CTGTCTAGTATTTAGCTAAACATTATCCTGCAATATTTATTGTCTCTTTTAAGTATCTCT