Contig 010959:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L05Sequence798010959 (10)ref|XP_010691314.1|3e-16PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga
JMFF025P17Sequence514010959 (10)ref|XP_010691314.1|2e-20PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga697010959 (10)ref|XP_010691314.1|8e-20PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga
JMFF042N24Sequence563010959 (10)ref|XP_010691314.1|3e-20PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga504010959 (10)ref|XP_010033876.1|1e-18PREDICTED: atherin-like [Eucalyptus grandis] gb|KCW53724.1| hypothetical protein
JMFF048N05Sequence385010959 (10)ref|XP_010691314.1|3e-20PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga381010959 (10)
JMFN010G06Sequence616010959 (10)ref|XP_010691314.1|7e-20PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga
JMSF007O07Sequence239010959 (10)710010959 (10)ref|XP_010691314.1|8e-20PREDICTED: splicing factor, arginine/serine-rich 19-like isoform X2 [Beta vulga

Alignment

This contig is upended


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JMSF007O07-                        GTATGGTGCCTCGAGAGCCGCTCTAAAAACAGCGATTTTGGAGAGAA
JMFN010G06-                                                      AGCGATTTTGGAGAGAA
JMFF042N24-                          ATGGTGCCTCGAGAGCCGCTCTAAAAACAGCGATTTTGGAGAGAA
rJMSF007O07+                         ATGGTGCCTCGAGAGCCGCTCTAAAAACAGCGATTTTGGAGAGAA
rJMFF001L05+                                                    CAGCGATTTTGGAGAGAA
                      ____________________________________________________________
consensus                          GTATGGTGCCTCGAGAGCCGCTCTAAAAACAGCGATTTTGGAGAGAA
 
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JMSF007O07-           GGAAGGCCAGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
JMFN010G06-           GGAAGGCCAGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
JMFF042N24-           GGAAGGCCAGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
JMFF048N05-                   AGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
rJMSF007O07+          GGAAGGCCAGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
rJMFF025P17+                   GAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
JMFF025P17-                    GAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
rJMFF001L05+          GGAAGGCCAGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
                      ____________________________________________________________
consensus             GGAAGGCCAGAAACACCAGTTCCGGCGACCATGGCGTTGCTCTCCCTCTCTCTTACTTCA
 
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JMSF007O07-           ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
JMFN010G06-           ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
JMFF042N24-           ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
JMFF048N05-           ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
rJMSF007O07+          ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
rJMFF025P17+          ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
JMFF025P17-           ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
rJMFF001L05+          ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
                      ____________________________________________________________
consensus             ACTCCCACGGCGGCGATGTTGAGTTCTTCCTCTTCATCGGCGACTTCATCCAGCGGCTGC
 
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JMSF007O07-           TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
JMFN010G06-           TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
JMFF042N24-           TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
JMFF048N05-           TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
rJMSF007O07+          TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
rJMFF025P17+          TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
JMFF025P17-           TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
rJMFF001L05+          TTCGCCGGCCCAGCTCCCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
                      ____________________________________________________________
consensus             TTCGCCGGCCCAGCT-CCTTGCCGACCACCGCAGACCTCCGCTTTTGTGGTGCTGCCGCC
 
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JMSF007O07-           TCTCAGCTTCAGA                                               
JMFN010G06-           TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
JMFF042N24-           TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
JMFF048N05-           TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
rJMSF007O07+          TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
rJMFF025P17+          TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
JMFF025P17-           TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
rJMFF042N24+                                       TTAACCGTCGGAAGTCACAGGTCGTGCGTAT
rJMFF001L05+          TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
                      ____________________________________________________________
consensus             TCTCAGCTTCAGATACAACGTTGTATCGCTTAACCGTCGGAAGTCACAGGTCGTGCGTAT
 
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JMFN010G06-           GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
JMFF042N24-           GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
JMFF048N05-           GGCTCCTGAAGATGAGAAGATGACTCGCCGACCTCCTCTCGATTTCCCCCTCGAATGGAT
rJMSF007O07+          GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
rJMFF025P17+          GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
JMFF025P17-           GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
rJMFF042N24+          GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
rJMFF001L05+          GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
                      ____________________________________________________________
consensus             GGCTCCTGAAGATGAGAAGATGACTCGCCGTTCTCCTCTCGATTTCCCCCTCGAATGGAT
 
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JMFN010G06-           AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
JMFF042N24-           AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
JMFF048N05-           AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
rJMSF007O07+          AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
rJMFF025P17+          AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
JMFF025P17-           AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
rJMFF042N24+          AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
rJMFF048N05+                                           TCCCCCAATTCAGCCCTATGAGAACTC
rJMFF001L05+          AAGACCAAAGCCCGGTCGCAGACCAGACATCTTTCCCCCAATTCAGCCCTATGAGAACTC
                      ____________________________________________________________
consensus             AAGACCAAAGCCCGGTCGCAGACCAGACATC-TTCCCCCAATTCAGCCCTATGAGAACTC
 
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JMFN010G06-           CACTGCCACCTCCATTGCCAGTTGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
JMFF042N24-           CACTGCCACCTCCATTGCCAGTTGATCCTCCCCTAGAAGATGATGAGGAGGAGGAAGAAG
JMFF048N05-           CACTGCCACCTCCATTGCCAGTTGATCCTCCTCT                          
rJMSF007O07+          CACTGCCACCTCCATTGCCAGTTGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
rJMFF025P17+          CACTGCCACCTCCATTGCCAGTTGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
JMFF025P17-           CACTGCCACCTCCATTGCCAGTTGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
rJMFF042N24+          CACTGCCACCTCCATTGCCAGTTGATCCTCCCCTAGAAGATGATGAGGAGGAGGAAGAAG
rJMFF048N05+          CACTGCCACCTCCATTGCCAGTGGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
rJMFF001L05+          CACTGCCACCTCCATTGCCAGTTGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
                      ____________________________________________________________
consensus             CACTGCCACCTCCATTGCCAGTTGATCCTCCTCTAGAAGATGATGAGGAGGAGGAAGAAG
 
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JMFN010G06-           AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
JMFF042N24-           AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
rJMSF007O07+          AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
rJMFF025P17+          AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
JMFF025P17-           AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
rJMFF042N24+          AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
rJMFF048N05+          AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
rJMFF001L05+          AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
                      ____________________________________________________________
consensus             AAGAGGAGAAGAAAGAGGATGATGAGCCTGAAAAGGAGGAGGAACCAGAAACACCAGACG
 
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JMFN010G06-           GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
JMFF042N24-           GAAAGTAATAGCAGTGGGCATCTCTTGTTGTGAGCTGGC                     
rJMSF007O07+          GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
rJMFF025P17+          GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
JMFF025P17-           GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGA                
rJMFF042N24+          GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
rJMFF048N05+          GTAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
rJMFF001L05+          GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
                      ____________________________________________________________
consensus             GAAAGTAATAGCAGTGGGCATCTTTTGTTGTGAGCTGGCAGAGAGCTTAGAGTTCTTGTA
 
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JMFN010G06-           TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
rJMSF007O07+          TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
rJMFF025P17+          TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
rJMFF042N24+          TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
rJMFF048N05+          TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
rJMFF001L05+          TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
                      ____________________________________________________________
consensus             TTAAAGGATTTAAAGCTAAGTCCATTGTGGCTTCCACAAGTTTGGATTGTGCTCTGGTTT
 
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JMFN010G06-           A                                                           
rJMSF007O07+          AGGCTTTAACTAGTATAGCATCATAAGGTACTGTGAAGTCATATTCATTTTTGTGGTCTC
rJMFF025P17+          AGGCTTTAACTAGTATAGCATCATAAGGTACTGTGAAGTCATATTCATTTTTGTGGTCTC
rJMFF042N24+          AGGCTTTAACTAGTATAGCATCATAAGGTACTGTGAAGTCATATTCATTTTTGTGGTCTC
rJMFF048N05+          AGGCTTTAACTAGTATAGCATCATAAGGTACTGTGAAGTCATATTCATTTTTGTGGTCTC
rJMFF001L05+          AGGCTTTAACTAGTATAGCATCATAAGGTACTGTGAAGTCATATTCATTTTTGTGGTCTC
                      ____________________________________________________________
consensus             AGGCTTTAACTAGTATAGCATCATAAGGTACTGTGAAGTCATATTCATTTTTGTGGTCTC
 
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rJMSF007O07+          CATTT                                                       
rJMFF025P17+          CATTTTGTAATGATAAGCTAAATGGTATGTGCTGTTTT                      
rJMFF042N24+          CATTTTGTAATGATAAGCTAAATGGTATGTGCTGTTTTCGAAA                 
rJMFF048N05+          CATTTTGTAATGATAAGCTAAATGGTATGTGCTGTTTTTGAAA                 
rJMFF001L05+          CATTTTGTAATGATAAGCTAAATGGTATGTGCTGTTTTTGAAACACAATTAGTTTACTCC
                      ____________________________________________________________
consensus             CATTTTGTAATGATAAGCTAAATGGTATGTGCTGTTTTTGAAACACAATTAGTTTACTCC
 
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rJMFF001L05+          CTAGCCCCAATCTTGACAAATTGTCAGTCACCACTCACAAATGGAAGCTATGAGCAAGAA
                      ____________________________________________________________
consensus             CTAGCCCCAATCTTGACAAATTGTCAGTCACCACTCACAAATGGAAGCTATGAGCAAGAA