| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012A14 | Sequence | 556 | 010954 (7) | ref|XP_009768108.1| | 5e-104 | PREDICTED: 26S protease regulatory subunit S10B homolog B-like isoform X2 [Nico | 749 | 010954 (7) | gb|ACJ83579.1| | 3e-105 | unknown [Medicago truncatula] |
| JMSF011F12 | Sequence | 362 | 010954 (7) | ref|XP_009768108.1| | 3e-54 | PREDICTED: 26S protease regulatory subunit S10B homolog B-like isoform X2 [Nico | 761 | 010954 (7) | ref|XP_002283544.1| | 4e-155 | PREDICTED: 26S protease regulatory subunit S10B homolog B [Vitis vinifera] emb| |
| JMSF038F01 | Sequence | 693 | 010954 (7) | ref|XP_009768108.1| | 4e-139 | PREDICTED: 26S protease regulatory subunit S10B homolog B-like isoform X2 [Nico | 909 | 010954 (7) | ref|XP_010263389.1| | 2e-154 | PREDICTED: 26S protease regulatory subunit 10B homolog A [Nelumbo nucifera] |
| JMSF053I13 | Sequence | 658 | 010954 (7) | ref|XP_009768108.1| | 2e-99 | PREDICTED: 26S protease regulatory subunit S10B homolog B-like isoform X2 [Nico | 906 | 021625 | ref|XP_002283544.1| | 6e-149 | PREDICTED: 26S protease regulatory subunit S10B homolog B [Vitis vinifera] emb| |
This contig is upended
. : . : . : . : . : . :
rJMFF012A14- ACTCGAA
____________________________________________________________
consensus ACTCGAA
. : . : . : . : . : . :
rJMFF012A14- TACTTCAGGTAAGAAAAGCACACCAAGTAAACATAACATTTTATGTATCTGTCATTTTGT
____________________________________________________________
consensus TACTTCAGGTAAGAAAAGCACACCAAGTAAACATAACATTTTATGTATCTGTCATTTTGT
. : . : . : . : . : . :
rJMFF012A14- CCTCTTTCTACTGGTGGTGTGGTGGAGGGTAGGGGGTGGGGGAGATGAAGGAGGAAATGT
____________________________________________________________
consensus CCTCTTTCTACTGGTGGTGTGGTGGAGGGTAGGGGGTGGGGGAGATGAAGGAGGAAATGT
. : . : . : . : . : . :
rJMFF012A14- TTGGGGGAGCATTGAGTTAGAATAAATCCATAAATTATCAGTATGCAAGAAGATATCCAG
____________________________________________________________
consensus TTGGGGGAGCATTGAGTTAGAATAAATCCATAAATTATCAGTATGCAAGAAGATATCCAG
. : . : . : . : . : . :
rJMFF012A14- CAAAATCTAGTGAAAGTGCCACGTATAGAAACATGATTTGCTACACGTACATCCATGGAT
____________________________________________________________
consensus CAAAATCTAGTGAAAGTGCCACGTATAGAAACATGATTTGCTACACGTACATCCATGGAT
. : . : . : . : . : . :
rJMFF012A14- CTCGAGAAGAAAAGTCGTTGATCCTAATCTTTGCCAAAATCTGCATTGTAATGTGCACTA
rJMSF011F12- TTGATCCTAATCTTTGCCAAAATCTGCATTGTAATGTGCACTA
rJMSF038F01- TTGATCCTAATCTTTGCCAAAATCTGCATTGTAATGTGCACTA
____________________________________________________________
consensus CTCGAGAAGAAAAGTCGTTGATCCTAATCTTTGCCAAAATCTGCATTGTAATGTGCACTA
. : . : . : . : . : . :
rJMFF012A14- GATTCGAGCTTCTTAGCTTCATTCAGTTTTCGAACAGCCTTCATAAAGTCTTCATGGATA
rJMSF011F12- GATTCGAGCTTCTTAGCTTCATTCAGTTTTCGAACAGCCTTCATAAAGTCTTCATGGATA
rJMSF038F01- GATTCGAGCTTCTTAGCTTCATTCAGTTTTCGAACAGCCTTCATAAAGTCTTCATGGATA
____________________________________________________________
consensus GATTCGAGCTTCTTAGCTTCATTCAGTTTTCGAACAGCCTTCATAAAGTCTTCATGGATA
. : . : . : . : . : . :
rJMFF012A14- ACATAATCTCTTTCAGCACGGATAGCTGACATCCCAGCCTCAGTACATACGTTACGCAGG
rJMSF011F12- ACATAATCTCTTTCAGCACGGATAGCTGACATCCCAGCCTCAGTACATACGTTACGCAGG
rJMSF038F01- ACATAATCTCTTTCAGCACGGATAGCTGACATCCCAGCCTCAGTACATACGTTACGCAGG
____________________________________________________________
consensus ACATAATCTCTTTCAGCACGGATAGCTGACATCCCAGCCTCAGTACATACGTTACGCAGG
. : . : . : . : . : . :
rJMFF012A14- TCAGCACCATTAAACCCCTCTGCGAGCTTAACAACAGCTTCATACTCAATTTCACCGTGT
rJMSF011F12- TCAGCACCATTAAACCCCTCTGCGAGCTTAACAACAGCTTCATACTCAATTTCACCGTGT
rJMSF038F01- TCAGCACCATTAAACCCCTCTGCGAGCTTAACAACAGCTTCATACTCAATTTCACCGTGT
____________________________________________________________
consensus TCAGCACCATTAAACCCCTCTGCGAGCTTAACAACAGCTTCATACTCAATTTCACCGTGT
. : . : . : . : . : . :
rJMFF012A14- TTGGCAATTCCAGAAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCATTTGGCAGT
rJMSF011F12- TTGGCAATTCCAGAAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCATTTGGCAGT
rJMSF038F01- TTGGCAATTCCAGAAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCATTTGGCAGT
____________________________________________________________
consensus TTGGCAATTCCAGAAGCATGAATTTTAAGAATTTCCATTCTTGACTGCTCATTTGGCAGT
. : . : . : . : . : . :
rJMFF012A14- GGGATTTCAATCTTCCTATCTAGACGCCCAGGTCGAAGAAGTGCAGGGTCAAGAACATCA
rJMSF011F12- GGGATTTCAATCTTCCTATCTAGACGCCCAGGTCGAAGAAGTGCAGGGTCAAGAACATCA
rJMSF038F01- GGGATTTCAATCTTCCTATCTAGACGCCCAGGTCGAAGAAGTGCAGGGTCAAGAACATCA
____________________________________________________________
consensus GGGATTTCAATCTTCCTATCTAGACGCCCAGGTCGAAGAAGTGCAGGGTCAAGAACATCA
. : . : . : . : . : . :
rJMFF012A14- GGTCGATTTGTTGCCATAATCATTTTTACCTTTCCAAGCTGATCAAATCCATCTAGCTGA
rJMSF011F12- GGTCGATTTGTTGCCATAATCATTTTTACCTTTCCAAGCTGATCAAATCCATCTAGCTGA
rJMSF038F01- GGTCGATTTGTTGCCATAATCATTTTTACCTTTCCAAGCTGATCAAATCCATCTAGCTGA
____________________________________________________________
consensus GGTCGATTTGTTGCCATAATCATTTTTACCTTTCCAAGCTGATCAAATCCATCTAGCTGA
. : . : . : . : . : . :
rJMFF012A14- TTAAGCAACTCCATGANTGTTCTCTGAATTTCACGATCAGCACTTGTTCCCTCACTAAAA
rJMSF011F12- TTAAGCAACTCCATGAGTGTTCTCTGAATTTCACGATCAGCACTTGTTCCCTCACTAAAA
rJMSF038F01- TTAAGCAACTCCATGAGTGTTCTCTGAATTTCACGATCAGCACTTGTTCCCTCACTAAAA
____________________________________________________________
consensus TTAAGCAACTCCATGAGTGTTCTCTGAATTTCACGATCAGCACTTGTTCCCTCACTAAAA
. : . : . : . : . : . :
rJMFF012A14- CGTCTTCCACCAATTGCATCAA
rJMSF011F12- CGTCTTCCACCAATTGCATCAATCTCATCCATAAAAATTATGCAGGGCTGGTGATCACGT
rJMSF038F01- CGTCTTCCACCAATTGCATCAATCTCATCCATAAAAATTATGCAGGGCTGGTGATCACGT
____________________________________________________________
consensus CGTCTTCCACCAATTGCATCAATCTCATCCATAAAAATTATGCAGGGCTGGTGATCACGT
. : . : . : . : . : . :
rJMSF011F12- GCATAATTAAACATTTCCCGAATCAACCTTGCACTTTCACCAATGTATTTATCAATAATG
rJMSF038F01- GCATAATTAAACATTTCCCGAATCAACCTTGCACTTTCACCAATGTATTTATCAATAATG
JMSF038F01+ ATCAATAATG
____________________________________________________________
consensus GCATAATTAAACATTTCCCGAATCAACCTTGCACTTTCACCAATGTATTTATCAATAATG
. : . : . : . : . : . :
rJMSF011F12- GCACTAGAAACAACCTTCAAAAAGTNGGCATCTATATTACTAGCAATAGCTCTAGCTAGC
rJMSF038F01- GCACTAGAAACAACCTTCAAAAAGTTGGCATCTATATTACTAGCAATAGCTCTAGCTAGC
JMSF038F01+ GCACTAGAAACAACCTTCAAAAAGTTGGCATCTATATTACTAGCAATAGCTCTAGCTAGC
____________________________________________________________
consensus GCACTAGAAACAACCTTCAAAAAGTTGGCATCTATATTACTAGCAATAGCTCTAGCTAGC
. : . : . : . : . : . :
rJMSF011F12- AATGTCTTCCCAGTACCAGGAGGTCCATACAG
rJMSF038F01- AATGTCNTCCCAGTACCAGGAGGTCCATACAG
JMSF038F01+ AATGTCTTCCCAGTACCAGGAGGTCCATACAGAAGAACACCCTTTGGAGGCTTGATTCCA
____________________________________________________________
consensus AATGTCTTCCCAGTACCAGGAGGTCCATACAGAAGAACACCCTTTGGAGGCTTGATTCCA
. : . : . : . : . : . :
JMSF038F01+ ACTCTGATGAAGAGCTCAGGATTCATTAGAGGCAACTCAATCGATTCCCTAAGTTCTCGA
JMFF012A14+ AGCTCAGGATTCATTAGAGGCAACTCAATCGATTCCCTAAGTTCTCGA
JMSF053I13+ AGCTCGGGATTCATAAGAGGCAGTTCAATAGATTCTCTAAGTTCTCGA
____________________________________________________________
consensus ACTCTGATGAAGAGCTCAGGATTCATTAGAGGCAACTCAATCGATTCCCTAAGTTCTCGA
. : . : . : . : . : . :
JMSF038F01+ ATTTGATCTGACAAACCACCTACAGCAGAGTAGCTAATATTTCCAGGATCCTCATGGAGC
JMFF012A14+ ATTTGATCTGACAAACCACCTACAGCAGAGTAGCTAATATCTCCAGGATCCTCATGGAGC
JMSF053I13+ ATTTGATCCGATAAACCACCTACCGCAGAGTAACTAACATTTCCAGGATCCTCATGGAGC
____________________________________________________________
consensus ATTTGATCTGACAAACCACCTACAGCAGAGTAGCTAATATTTCCAGGATCCTCATGGAGC
. : . : . : . : . : . :
JMSF038F01+ ATGTTATAAACAACAGGGTCAACCTCACGTGGGAGAGCTCGCATGATTGTCAGGGTTGTC
JMFF012A14+ ATGTTATAAACAACAGGGTCAACCTCACGTGGGAGAGCTCGCATGATTGTCAGGGTTGTC
JMSF053I13+ ATGCTATAAACAACAGGGTCAACCTCGCGTGGGAGAGCTCGCATGATTGTGAGGGTAGTC
____________________________________________________________
consensus ATGTTATAAACAACAGGGTCAACCTCACGTGGGAGAGCTCGCATGATTGTCAGGGTTGTC
. : . : . : . : . : . :
JMSF038F01+ ATGTCAAGGACCACTCTTGTTCCAGCAGTCAATTTTTCCTTATCAAGTTTATTACGGCAG
JMFF012A14+ ATGTCAAGGACCACTCTTGTTCCAGCAGTCAATTTTTCCTTATCAAGTTTATTACGGCAG
JMSF011F12+ CAGCAGTCAATTTTTCCTTATCAAGTTTATTACGGCAG
JMSF053I13+ ATGTCGAGGACCACCCTAGTTCCAGCAATCAATTTTTCCTTGTCAAGTTTATTTCGGCAG
____________________________________________________________
consensus ATGTCAAGGACCACTCTTGTTCCAGCAGTCAATTTTTCCTTATCAAGTTTATTACGGCAG
. : . : . : . : . : . :
JMSF038F01+ CCAACAACATACCTTGGGCCACTGCTTGCTTTGACAATCATTCGTTCATGGTCAAGAGGC
JMFF012A14+ CCAACAACATACCTTGGGCCACTGCTTGCTTTGACAATCATTCGTTCATGGTCAAGAGGC
JMSF011F12+ CCAACAACATACCTTGGGCCACTGCTTGCTTTGACAATCATTCGTTCATGGTCAAGAGGC
JMSF053I13+ CCAACAACATATCTCGGGCCACTGCTCGCTTTGACAATCATTCGTTCATGGTCAAGAGGC
____________________________________________________________
consensus CCAACAACATACCTTGGGCCACTGCTTGCTTTGACAATCATTCGTTCATGGTCAAGAGGC
. : . : . : . : . : . :
JMSF038F01+ CTGAGAACTTCTCCGATAATCTGCCCTACGCTCTGAAGAGACTTCAAATCATCCTCTGTT
JMFF012A14+ CTGAGAACTTCTCCGATAATCTGCCCTACGCTCTGAAGAGACTTCAAATCATCCTCTGTT
JMSF011F12+ CTGAGAACTTCTCCGATAATCTGCCCTACGCTCTGAAGAGACTTCAAATCATCCTCTGTT
JMSF053I13+ CTAAGAACTTCACCAATTATCTGGCCTACACTCTGAAGAGACTTCAAATCATCCTCAGTT
____________________________________________________________
consensus CTGAGAACTTCTCCGATAATCTGCCCTACGCTCTGAAGAGACTTCAAATCATCCTCTGTT
. : . : . : . : . : . :
JMSF038F01+ TTGTTGAAGTCCTTCTTCGCAGCTCT
JMFF012A14+ TTGTTGAAGTCCTTCTTCGCAGCTCT
JMSF011F12+ TTGTTGAAGTCCTTCTTCGCAGCTCT
JMSF053I13+ TTGTTGAAATCCTTCTTCGCAGCTCTGAAATTATCCCTAACTGTTTTAAGCCTAGCTTCG
____________________________________________________________
consensus TTGTTGAAGTCCTTCTTCGCAGCTCTGAAATTATCCCTAACTGTTTTAAGCCTAGCTTCG
. : . : . : . : . : . :
JMSF053I13+ AGCTCTTTGTGGTGAAGGAGCTTCTTCCGGTACTCCGCCGCCGTCGCATTGCGGCGTCGA
____________________________________________________________
consensus AGCTCTTTGTGGTGAAGGAGCTTCTTCCGGTACTCCGCCGCCGTCGCATTGCGGCGTCGA
. : . : . : . : . : . :
JMSF053I13+ ACTGCATCTTCCCCTTCTCCTTCACTCATCGCCCGAATCGGAGAGTTGATCGGAATTCAG
____________________________________________________________
consensus ACTGCATCTTCCCCTTCTCCTTCACTCATCGCCCGAATCGGAGAGTTGATCGGAATTCAG
. : . : . : . : . : . :
JMSF053I13+ AAAGTTCAGGGAGCTGACGTGAATCGGAAAACAGAAGAAAGTATAAAAATGGCGTCTTTA
____________________________________________________________
consensus AAAGTTCAGGGAGCTGACGTGAATCGGAAAACAGAAGAAAGTATAAAAATGGCGTCTTTA
. : . : . : . : . : . :
JMSF053I13+ CAGCGGTTGAAAGCTTTCTATAATGATGATTTGGAAGGTTGGTAGAGTTGGAGCCTTCTC
____________________________________________________________
consensus CAGCGGTTGAAAGCTTTCTATAATGATGATTTGGAAGGTTGGTAGAGTTGGAGCCTTCTC