Contig 010938:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044D09Sequence796010938 (3)ref|XP_009774336.1|6e-80PREDICTED: protein TIC 62, chloroplastic [Nicotiana sylvestris]756014094 (3)emb|CDP09104.1|2e-29unnamed protein product [Coffea canephora]
JMSF051G04Sequence692010938 (3)ref|XP_009774336.1|1e-77PREDICTED: protein TIC 62, chloroplastic [Nicotiana sylvestris]762014094 (3)emb|CDP09104.1|1e-28unnamed protein product [Coffea canephora]
JMSF051G14Sequence692010938 (3)ref|XP_009774336.1|2e-82PREDICTED: protein TIC 62, chloroplastic [Nicotiana sylvestris]712014094 (3)emb|CDP09104.1|2e-27unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF044D09+                                    AACAGAGTGTTGAAGAACGACGTAATGCCATCAAG
                      ____________________________________________________________
consensus                                      AACAGAGTGTTGAAGAACGACGTAATGCCATCAAG
 
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JMSF044D09+           GACGTTGTATGTAGACGATGAGGCTGATCCATCGTACACAATGGCCACATGGCCAACACC
                      ____________________________________________________________
consensus             GACGTTGTATGTAGACGATGAGGCTGATCCATCGTACACAATGGCCACATGGCCAACACC
 
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JMSF051G14+                ATTCAGCAGCTTGGATAACCTGCAAGGCATCAGATGCCGTGACCTCTTCCGTTGG
JMSF044D09+           AGCTAATTCAGCAGCTTGGATAACCTGCAAGGCATCAGATGCCGTGACCTCTTCCGTTGG
JMSF051G04+                                       AAGGCATCAGATGCCGTGACTTCTTCCGTTGG
                      ____________________________________________________________
consensus             AGCTAATTCAGCAGCTTGGATAACCTGCAAGGCATCAGATGCCGTGACCTCTTCCGTTGG
 
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JMSF051G14+           TCCATTCTCAAAAGGACCAATGGTAACAACAACTTTGCTTGCATTCCCAATCGCTTTCGC
JMSF044D09+           TCCATTCTCAAAAGGACCAATGGTAACAACAAC-TTGCTTGCATTCCCAATCGCTTTCGC
JMSF051G04+           TCCATTCTCAAAAGGACCAATNGTAACAACAACTTTGCTTGCATTCCCAATCGCTTTCGC
                      ____________________________________________________________
consensus             TCCATTCTCAAAAGGACCAATGGTAACAACAACTTTGCTTGCATTCCCAATCGCTTTCGC
 
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JMSF051G14+           AATTGATTCTGCGTCTTGGAAGGTAGATTGAACCGCGTTGAATCGTTTCGCCTCCTCATT
JMSF044D09+           AATTGATTCTGCGTCTTGGAAGGTAGATTGAACCGCGTTGAATCGTTTCGCCTCCTCATT
JMSF051G04+           AATTGATTCTGCGTCTTGGAAGGTAGATTGAACCGCGTTGAATCGTTTCGCCTCCTCATT
                      ____________________________________________________________
consensus             AATTGATTCTGCGTCTTGGAAGGTAGATTGAACCGCGTTGAATCGTTTCGCCTCCTCATT
 
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JMSF051G14+           AGAGATTATCTTGTATTGAGCAGCTAAAACAGCAAGCTCTTGAGCAGCAGCGAGATCAGG
JMSF044D09+           AGAGATTATCTTGTATTGAGCAGCTAAAACAGCAAGCTCTTGAGCAGCAGCGAGATCAGG
JMSF051G04+           AGAGATTATCTTGTATTGAGCAGCTAAAACAGCAAGCTCTTGAGCAGCAGCGAGATCAGG
                      ____________________________________________________________
consensus             AGAGATTATCTTGTATTGAGCAGCTAAAACAGCAAGCTCTTGAGCAGCAGCGAGATCAGG
 
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JMSF051G14+           GACACCAGCTCTAACACTAAACCCCTCCCGGAGAAGCGTCTGAGCAATGCGGACTCCGGC
JMSF044D09+           GACACCAGCTCTAACACTAAACCCCTCCCGGAGAAGCGTCTGAGCAATGCGGACTCCGGC
JMSF051G04+           GACACCAGCTCTAACACTAAACCCCTCCCGGAGAAGCGTCTGAGCAATGCGGACTCCGGC
                      ____________________________________________________________
consensus             GACACCAGCTCTAACACTAAACCCCTCCCGGAGAAGCGTCTGAGCAATGCGGACTCCGGC
 
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JMSF051G14+           TAGGCCAGTAGCACCGGCGACGTATACCGTTCCGGGGTCCTTCCGGCGCTGGCGGCCGAA
JMSF044D09+           TAGGCCAGTAGCACCGGCGACGTATACCGTTCCGGGGTCCTTCCGGCGCTGGCGGCCGAA
JMSF051G04+           TAGGCCAGTAGCACCGGCGACGTATACCGTTCCGGGGTCCTTCCGGCGCTGGCGGCCGAA
                      ____________________________________________________________
consensus             TAGGCCAGTAGCACCGGCGACGTATACCGTTCCGGGGTCCTTCCGGCGCTGGCGGCCGAA
 
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JMSF051G14+           CGACAAGCCGGAAGCGGAGTTCGTCGGCGAGAGAGGGACCAGAGACTTAACATCAGGAAT
JMSF044D09+           CGACAAGCCGGAAGCGGAGTTCGTCGGCGAGAGAGGGACCAGAGACTTAACATCAGGAAT
JMSF051G04+           CGACAAGCCGGAAGCGGAGTTCGTCGGCGAGAGAGGGACCAGAGACTTAACATCAGGAAT
                      ____________________________________________________________
consensus             CGACAAGCCGGAAGCGGAGTTCGTCGGCGAGAGAGGGACCAGAGACTTAACATCAGGAAT
 
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JMSF051G14+           CTTCCCAAAGTCGAAACGGAAGGGGCTGGAATTGGGCGAGGTTTCCTGATCGTCACCGGC
JMSF044D09+           CTTCCCAAAGTCGAAACGGAAGGGGCTGGAATTGGGCGAGGTTTCCTGATCGTCACCGGC
JMSF051G04+           CTTCCCAAAGTCGAAACGGAAGGGGCTGGAATTGGGCGAGGTTTCCTGATCGTCACCGGC
                      ____________________________________________________________
consensus             CTTCCCAAAGTCGAAACGGAAGGGGCTGGAATTGGGCGAGGTTTCCTGATCGTCACCGGC
 
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JMSF051G14+           GCTGCTAAGGCGGAAGGGCGGGAATGGACCGGACTTCTTAGCGAAAACGGTGAGCTTAGG
JMSF044D09+           GCTGCTAAGGCGGAAGGGCGGGAATGGACCGGACTTCTTAGCGAAAACGGTGAGCTTAGG
JMSF051G04+           GCTGCTAAGGCGGAAGGGCGGGAATGGACCGGACTTCTTAGCGAAAACGGTGAGCTTAGG
                      ____________________________________________________________
consensus             GCTGCTAAGGCGGAAGGGCGGGAATGGACCGGACTTCTTAGCGAAAACGGTGAGCTTAGG
 
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JMSF051G14+           AATCCGCAAACCGACAAGTCTAGAATGGGGTATGGGTTTGGGGAGGAATGGATTAGAAGT
JMSF044D09+           AATCCGCAAACCGACAAGTCTAGAATGGGGTATGGGTTTGGGGAGGAATGGATTAGAAGT
JMSF051G04+           AATCCGCAAACCGACAAGTCTAGAATGGGGTATGGGTTTGGGGAGGAATGGATTAGAAGT
                      ____________________________________________________________
consensus             AATCCGCAAACCGACAAGTCTAGAATGGGGTATGGGTTTGGGGAGGAATGGATTAGAAGT
 
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JMSF051G14+           GAGAGTTGGAGCCATGAATGAATGCTAGTGCGGTGCCTATTCCCACTTCTCCATTGAGCT
JMSF044D09+           GAGAGTTGGAGCCATGAATGAATGCTAGTGCGGTGCCTATTCCCACTTCTCCATTGAGCT
JMSF051G04+           GAGAGTTGGAGCCATGAATGAATGCTAGTGCGGTGCCTATTCCCACTTCTCCATTGAGCT
                      ____________________________________________________________
consensus             GAGAGTTGGAGCCATGAATGAATGCTAGTGCGGTGCCTATTCCCACTTCTCCATTGAGCT
 
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JMSF051G14+           CTTGATTAGCTTTGGTGAAAGACAAGCAAATAGCT                         
JMSF044D09+           CTTGATTAGCTTTGGTGAAAGACAAGCAAATAGCT                         
JMSF051G04+           CTTGATTAGCTTTGGTGAAAGACAAGCAAATAGCTTAGCATGGGACAACGGTGTAGTCTC
                      ____________________________________________________________
consensus             CTTGATTAGCTTTGGTGAAAGACAAGCAAATAGCTTAGCATGGGACAACGGTGTAGTCTC