Contig 010935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033A03Sequence622010935 (4)ref|XP_002268954.2|9e-81PREDICTED: transmembrane protein 184 homolog DDB_G0279555-like [Vitis vinifera]718010935 (4)emb|CBI23472.3|3e-113unnamed protein product [Vitis vinifera]
JMSF050P02Sequence688010935 (4)emb|CDO99619.1|6e-114unnamed protein product [Coffea canephora]733010935 (4)ref|XP_006347105.1|4e-106PREDICTED: transmembrane protein 184C-like isoform X1 [Solanum tuberosum] ref|X

Alignment

This contig is upended


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rJMSF050P02-                                     AACCCATATGTTTCTCTAATATTTTTCAATGTG
                      ____________________________________________________________
consensus                                        AACCCATATGTTTCTCTAATATTTTTCAATGTG
 
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rJMSF050P02-          GACTCTTAACACTACCTTTTTTTACAAAGCTTGAAAATATATGAAATCATAGAGCATTTA
rJMSF033A03-                   CACTACCTTTTTTTACAAAGCTTGAAAATGTATGAAATCATAGAGCATTTA
                      ____________________________________________________________
consensus             GACTCTTAACACTACCTTTTTTTACAAAGCTTGAAAATGTATGAAATCATAGAGCATTTA
 
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rJMSF050P02-          CAGCAAGAATACACTAACAAAATGCATATTGCTGCATAACACCGGACTTTTCTCCAAACT
rJMSF033A03-          CAGCAAGAATACACTAACAAAATGCATATTGCTGCATAACACCGGACTTTTCTCCAAACT
                      ____________________________________________________________
consensus             CAGCAAGAATACACTAACAAAATGCATATTGCTGCATAACACCGGACTTTTCTCCAAACT
 
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rJMSF050P02-          CGAGTACATCAATACCAGTCAGCAATCTAGTGCACAGAGCAAATTATTCACTCTTCTTAA
rJMSF033A03-          CGAGTACATCAATACCAGTCAGCAATCTAGTGCACAGAGCAAATTATTCACTCTTCTTAA
                      ____________________________________________________________
consensus             CGAGTACATCAATACCAGTCAGCAATCTAGTGCACAGAGCAAATTATTCACTCTTCTTAA
 
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rJMSF050P02-          GTCTCAGTTTTGCTTCCATGTCTCCACTGTAGGGAGCAACATGGAATGCGTATTGCTGCA
rJMSF033A03-          GTCTCAGTTTTGCTTCCATGTCTCCACTGTAGGGAGCAACATGGAATGCGTATTGCTGCA
                      ____________________________________________________________
consensus             GTCTCAGTTTTGCTTCCATGTCTCCACTGTAGGGAGCAACATGGAATGCGTATTGCTGCA
 
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rJMSF050P02-          TAAGAGCGAAGAAAACCATATCAACACAGATTAAGACATTTTGAATGGCTTCCTGAATGT
rJMSF033A03-          TAAGAGCGAAGAAAACCATCTCAACACAGATTAAGACATTTTGAATGGCTTCCTGAATGT
                      ____________________________________________________________
consensus             TAAGAGCGAAGAAAACCATCTCAACACAGATTAAGACATTTTGAATGGCTTCCTGAATGT
 
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rJMSF050P02-          GCTCTACGTCCAACCAGAAATGCTGAGACTTAATGATGCCCATTGCAACCAGAATGTCGA
rJMSF033A03-          GCTCTACGTCCAACCAGAAATGCTGAGACTTAATGATGCCCATTGCAACCAGAATGTCGA
                      ____________________________________________________________
consensus             GCTCTACGTCCAACCAGAAATGCTGAGACTTAATGATGCCCATTGCAACCAGAATGTCGA
 
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rJMSF050P02-          GCAAGATCCCCTGCCAAAAGGAGAAGAAGACGATCCCCTTGATGCAGAGGAACTTGGAAA
rJMSF033A03-          GCAAGATCCCCTGCCAAAAGGAGAAGAAGACGATCCCCTTGATGCAGAGGAACTTGGAAA
                      ____________________________________________________________
consensus             GCAAGATCCCCTGCCAAAAGGAGAAGAAGACGATCCCCTTGATGCAGAGGAACTTGGAAA
 
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rJMSF050P02-          GCGGTTTGTGTGGTTGCAATTCCTTTGAGAAGACATGATAGAAAGCGAGCAAGGAATACA
rJMSF033A03-          GCGGTTTGTGTGGTTGCAATTCCTTTGAGAAGACATGATAGAAAGCGAGCAAGGAATACA
JMSF050P02+                                           ACATGATAGAAAGCGAGCAAGGAATACA
                      ____________________________________________________________
consensus             GCGGTTTGTGTGGTTGCAATTCCTTTGAGAAGACATGATAGAAAGCGAGCAAGGAATACA
 
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rJMSF050P02-          TTGCAACATAAAATGAAATGTTGAGAATTATGGTAAACGTCCAACTGAGCCAGCTAGGGT
rJMSF033A03-          TTGCAACATAAAATGAAATGTTGAGAATTATGGTAAACGTCCAACTGAGCCAGCTAGGGT
JMSF033A03+                                             AAACGTCCAACTGAGCCAGCTAGGGT
JMSF050P02+           TTGCAACATAAAATGAAATGTTGAGAATTATGGTAAACGTCCAACTGAGCCAGCTAGGGT
                      ____________________________________________________________
consensus             TTGCAACATAAAATGAAATGTTGAGAATTATGGTAAACGTCCAACTGAGCCAGCTAGGGT
 
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rJMSF050P02-          AGAATCCAAGAATCTGTAACGTTATCATCAAAATGGAGCTTATGGGACGGACAATAACAA
rJMSF033A03-          AGAATCCAAGAATCTGTAACGTTATCATCAAAATGGAGCTTATGGGACGGACAATAACAA
JMSF033A03+           AGAATCCAAGAATCTGTAACGTNATCATCAAAATGGAGCTTATGGGACGGACAATAACAA
JMSF050P02+           AGAATCCAAGAATCTGTAACGTTATCATCAAAATGGAGCTTATGGGACGGACAATAACAA
                      ____________________________________________________________
consensus             AGAATCCAAGAATCTGTAACGTTATCATCAAAATGGAGCTTATGGGACGGACAATAACAA
 
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rJMSF050P02-          ATTGCCATGTCCAGTATTTGAGAAGCTTTAGTGTATGGTGGTCCAAACGAGTAGTGCGAG
rJMSF033A03-          ATTGCCATGTCCAGTATTTGAGAAGCTTTAGTGTATGGTGGTCCAAACGAGTAGTGCGAG
JMSF033A03+           ATTGCCATGTCCAGTATTTGAGAAGCTTTAGTGTATGGTGGTCCAAACGAGTAGTGCGAG
JMSF050P02+           ATTGCCATGTCCAGTATTTGAGAAGCTTTAGTGTATGGTGGTCCAAACGAGTAGTGCGAG
                      ____________________________________________________________
consensus             ATTGCCATGTCCAGTATTTGAGAAGCTTTAGTGTATGGTGGTCCAAACGAGTAGTGCGAG
 
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rJMSF050P02-          GCTGAAATAAAGTCATTGGGAACGAATGATGAATCTCTCT                    
rJMSF033A03-          GCTGAAATAAAGTCATTGGGAACGAATGATGAATCTCTCTTCCNTTGATTCCATCGGGCA
JMSF033A03+           GCTGAAATAAAGTCATTGGGAACGAATGATGAATCTCTCTTCCTTTGATTCCATCGGGCA
JMSF050P02+           GCTGAAATAAAGTCATTGGGAACGAATGATGAATCTCTCTTCCTTTGATTCCATCGGGCA
                      ____________________________________________________________
consensus             GCTGAAATAAAGTCATTGGGAACGAATGATGAATCTCTCTTCCTTTGATTCCATCGGGCA
 
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rJMSF033A03-          CTATGTT                                                     
JMSF033A03+           CTATGTTTTTGCTGATGGATATGTTTANATAGCTATNCAGTAACGCCAAAAACTTAGCAA
JMSF050P02+           CTATGTTTTTGCTGATGGATATGTTTAAATAGCTATACAGTAACGCCAAAAACTTAGCAA
                      ____________________________________________________________
consensus             CTATGTTTTTGCTGATGGATATGTTTAAATAGCTATACAGTAACGCCAAAAACTTAGCAA
 
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JMSF033A03+           TTGCCAGAGCCTCGTAGCATTCCTTAATTGAGTCAAGAAACATGAAAAATTCTTTGCTTC
JMSF050P02+           TTGCCAGAGCCTCGTAGCATTCCTTAATTGAGTCAAGAAACATGAAAAATTCTTTGCTTC
                      ____________________________________________________________
consensus             TTGCCAGAGCCTCGTAGCATTCCTTAATTGAGTCAAGAAACATGAAAAATTCTTTGCTTC
 
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JMSF033A03+           CCNTAATNTCCAACAACCCCAGAAATGAGTCAACAGCATAAATNGGAGCCATAAGTATAA
JMSF050P02+           CCCTAATATCCAACAACCCCAGAAATGAGTCAACAGCATAAATTGGAGCCATAAGTATAA
                      ____________________________________________________________
consensus             CCCTAATATCCAACAACCCCAGAAATGAGTCAACAGCATAAATTGGAGCCATAAGTATAA
 
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JMSF033A03+           TTATTATAATCGCTTTCTGTTCCTTTGGGTTCTTCCAGTAAAAGAGGTGCTGAGACAAAG
JMSF050P02+           TTATTATAATCGCTTTCTGTTCCTTTGGGTTCTTCCAGTAAAAGAGGTGCTGAGACAAAG
                      ____________________________________________________________
consensus             TTATTATAATCGCTTTCTGTTCCTTTGGGTTCTTCCAGTAAAAGAGGTGCTGAGACAAAG
 
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JMSF033A03+           TTTGTATTGTCAAATGCATTGTAAACAATGTACAGATCCCAGCTCCAGCAATAGTAAGTT
JMSF050P02+           TTTGTATTGTCAAATGCATTGTAAACAATGTACAGATCCCAGCTCCAGCAATAGTAAGTT
                      ____________________________________________________________
consensus             TTTGTATTGTCAAATGCATTGTAAACAATGTACAGATCCCAGCTCCAGCAATAGTAAGTT
 
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JMSF033A03+           CCCCGCGGTTCATNTTCGTGAAATCCATTCTTCAGAAGTATGCACAAAGCCAAACCAAAC
JMSF050P02+           CCCCGCGGTTCATCTTCGTGAAATCCATTCTTCAGAAGTATGCACAAAGCCAAACCAAAC
                      ____________________________________________________________
consensus             CCCCGCGGTTCATCTTCGTGAAATCCATTCTTCAGAAGTATGCACAAAGCCAAACCAAAC
 
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JMSF033A03+           CTGAGTGAATTTAGCGGGAGATGCGAATCAGTGTACAAATCCGGCAAATCTCCTT     
JMSF050P02+           CTGAGTGAATTTAGCGGGAGATGCGAATCAGTGTACAAATCCGGCAAATCTCCTTATGTC
                      ____________________________________________________________
consensus             CTGAGTGAATTTAGCGGGAGATGCGAATCAGTGTACAAATCCGGCAAATCTCCTTATGTC