Contig 010933:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014M11Sequence470010933 (3)emb|CDP14272.1|1e-58unnamed protein product [Coffea canephora]805014114 (3)emb|CDP14272.1|2e-141unnamed protein product [Coffea canephora]
JMSF047J15Sequence694010933 (3)ref|XP_009587250.1|2e-112PREDICTED: DNA replication licensing factor MCM5 [Nicotiana tomentosiformis]805014114 (3)emb|CDP14272.1|1e-127unnamed protein product [Coffea canephora]
JMSF050N14Sequence636010933 (3)ref|XP_009587250.1|5e-97PREDICTED: DNA replication licensing factor MCM5 [Nicotiana tomentosiformis]751014114 (3)emb|CDP14272.1|4e-127unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF047J15+                                     GTCTTCACCAGTCTGAGGCACATGATCACAGGAA
                      ____________________________________________________________
consensus                                       GTCTTCACCAGTCTGAGGCACATGATCACAGGAA
 
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JMSF047J15+           CGTGGAACAATGGCTCCACCAAGCCCTGGGCGACATGGAACAACCTTCACATTTTTGCAA
JMSF050N14+                                   CCTGGGCGACATGGAACAACCTTCACATTTTTGCAA
                      ____________________________________________________________
consensus             CGTGGAACAATGGCTCCACCAAGCCCTGGGCGACATGGAACAACCTTCACATTTTTGCAA
 
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JMSF047J15+           TTCTTACATAACAGGGTAACATAAGTTGCCTTCGCCTTGGTCCTTGATGCAGCAATGACA
JMSF050N14+           TTCTTACATAACAGGGTAACATAAGTTGCCTTCGCCTTGGTCCTTGATGCAGCAATGACA
                      ____________________________________________________________
consensus             TTCTTACATAACAGGGTAACATAAGTTGCCTTCGCCTTGGTCCTTGATGCAGCAATGACA
 
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JMSF047J15+           ATCCCAGATATCTTCACTAGTTTTGATATATATTGTGCCCCAAGGGACCGCATTGAGATT
JMSF050N14+           ATCCCAGATATCTTCACTAGTTTTGATATATATTGTGCCCCAAGGGACCGCATTGAGATT
                      ____________________________________________________________
consensus             ATCCCAGATATCTTCACTAGTTTTGATATATATTGTGCCCCAAGGGACCGCATTGAGATT
 
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JMSF047J15+           GAATCCTGCTCAGATCTCAATAGTATTTGTACTTCTCCAGTCTCTGGTTCTTCCATTTCT
JMSF014M11+                 TGCTCAGATCTCAATAGTATTTGTACTTCTCCAGTCTCTGGTTCTTCCATTTCT
JMSF050N14+           GAATCCTGCTCAGATCTCAATAGTATTTGTACTTCTCCAGTCTCTGGTTCTTCCATTTCT
                      ____________________________________________________________
consensus             GAATCCTGCTCAGATCTCAATAGTATTTGTACTTCTCCAGTCTCTGGTTCTTCCATTTCT
 
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JMSF047J15+           CCAGTTTCTCCAGCTACTCTTGATCTCAAACTTGCCAGAACTTCAGCTGCTGCAGTTTCA
JMSF014M11+           CCAGTTTCTCCAGCTACTCTTGATCTCAAACTTGCCAGAACTTCAGCTGCTGCAGTTTCA
JMSF050N14+           CCAGTTTCTCCAGCTACTCTTGATCTCAAACTTGCCAGAACTTCAGCTGCTGCAGTTTCA
                      ____________________________________________________________
consensus             CCAGTTTCTCCAGCTACTCTTGATCTCAAACTTGCCAGAACTTCAGCTGCTGCAGTTTCA
 
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JMSF047J15+           AACAGGGGAAGGTAATCGGCAGGATTCTGGCGGAGTAGTTCCGGGAGGGTTTGGTCGCGT
JMSF014M11+           AACAGGGGAAGGTAATCGGCAGGATTCTGGCGGAGTAGTTCCGGGAGGGTTTGGTCGCGT
JMSF050N14+           AACAGGGGAAGGTAATCGGCAGGATTCTGGCGGAGTAGTTCCGGGAGGGTTTGGTCGCGT
                      ____________________________________________________________
consensus             AACAGGGGAAGGTAATCGGCAGGATTCTGGCGGAGTAGTTCCGGGAGGGTTTGGTCGCGT
 
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JMSF047J15+           TCATATGAAAGGAGGTCGGAAAGGTTGATGATGAGAAACTTGGAATTTTCGAGAAGAGCT
JMSF014M11+           TCATATGAAAGGAGGTCGGAAAGGTTGATGATGAGAAACTTGGAATTTTCGAGAAGAGCT
JMSF050N14+           TCATATGAAAGGAGGTCGGAAAGGTTGATGATGAGAAACTTGGAATTTTCGAGAAGAGCT
                      ____________________________________________________________
consensus             TCATATGAAAGGAGGTCGGAAAGGTTGATGATGAGAAACTTGGAATTTTCGAGAAGAGCT
 
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JMSF047J15+           TCGCGATAGGGAAAGAGATTGGGCTGGCTCTTGTGAGGGAAGTTCCTGATGAACTCCTTG
JMSF014M11+           TCGCGATAGGGAAAGAGATTGGGCTGGCTCTTGTGAGGGAAGTTCCTGATGAACTCCTTG
JMSF050N14+           TCGCGATAGGGAAAGAGATTGGGCTGGCTCTTGTGAGGGAAGTTCCTGATGAACTCCTTG
                      ____________________________________________________________
consensus             TCGCGATAGGGAAAGAGATTGGGCTGGCTCTTGTGAGGGAAGTTCCTGATGAACTCCTTG
 
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JMSF047J15+           AATTTCTGGAGGATTACATGGCGGCTTTTCGCAGACGGACCCCCCTGACCGGCGTCGCCG
JMSF014M11+           AATTTCTGGAGGATTACATGGCGGCTTTTCGCAGACGGACCCCCCTGACCGGCGTCGCCG
JMSF050N14+           AATTTCTGGAGGATTACATGGCGGCTTTTCGCAGACGGACCCCCCTGACCGGCGTCGCCG
                      ____________________________________________________________
consensus             AATTTCTGGAGGATTACATGGCGGCTTTTCGCAGACGGACCCCCCTGACCGGCGTCGCCG
 
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JMSF047J15+           GAACCACCGCCGGGCGGGAACTGCGCTTGGTCGCTGTAGTATACGGCTCCCTCGTCCCAA
JMSF014M11+           GAACCACCGCCGGGCGGGAACTGCGCTTGGTCGCTGTAGTATACGGCTCCCTCGTCCCAA
JMSF050N14+           GAACCACCGCCGGGCGGGAACTGCGCTTGGTCGCTGTAGTATACGGCTCCCTCGTCCCAA
                      ____________________________________________________________
consensus             GAACCACCGCCGGGCGGGAACTGCGCTTGGTCGCTGTAGTATACGGCTCCCTCGTCCCAA
 
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JMSF047J15+           CCCGACATTTTCTCCTTCTCTCTACAGATCTCTTGCTCTCTCACAACGCAGTCG      
JMSF014M11+           CCCGACATTTTCTCCTTCTCTCTACAGATCTCTTGCTCTCTCACAACGCAGTCG      
JMSF050N14+           CCCGACATTTTCTCCTTCTCTCTACAGATCTCTTGCTCTCTCACAACGCAGTCGCAGGTC
                      ____________________________________________________________
consensus             CCCGACATTTTCTCCTTCTCTCTACAGATCTCTTGCTCTCTCACAACGCAGTCGCAGGTC