Contig 010931:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035O24Sequence624010931 (2)ref|XP_010278453.1|5e-71PREDICTED: organic cation/carnitine transporter 7 [Nelumbo nucifera] ref|XP_0102
JMSF050M17Sequence647010931 (2)ref|XP_008456184.1|1e-87PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo]606021606ref|XP_008342934.1|5e-35PREDICTED: organic cation/carnitine transporter 7-like [Malus domestica]

Alignment

This contig is upended


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JMFN035O24+                                                      GCATTTATTTTTACTGC
                      ____________________________________________________________
consensus                                                        GCATTTATTTTTACTGC
 
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JMFN035O24+           TGTTCAACTGGGTTGTCAGCAGAACGAGGCCATAATAAGAAAACGCATTCCCGAAGAAAA
                      ____________________________________________________________
consensus             TGTTCAACTGGGTTGTCAGCAGAACGAGGCCATAATAAGAAAACGCATTCCCGAAGAAAA
 
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JMFN035O24+           CCGTCCACAAAAGGAGAGTCGATTTAGCTAATTCTGGTGAAAGAAGCATAACCAGTGAAG
                      ____________________________________________________________
consensus             CCGTCCACAAAAGGAGAGTCGATTTAGCTAATTCTGGTGAAAGAAGCATAACCAGTGAAG
 
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JMFN035O24+           AAAACCATCCTGTGGCAGGTTCCACCGGTTTAGATTTTACACTTTCTTCTGCCTTTGGTG
                      ____________________________________________________________
consensus             AAAACCATCCTGTGGCAGGTTCCACCGGTTTAGATTTTACACTTTCTTCTGCCTTTGGTG
 
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JMFN035O24+           ACAGCAAATGTCTATCTTCTGATGCAGAGCCAGAGCCATTACCTTCCGCCCCCGCAGCTT
                      ____________________________________________________________
consensus             ACAGCAAATGTCTATCTTCTGATGCAGAGCCAGAGCCATTACCTTCCGCCCCCGCAGCTT
 
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JMFN035O24+           CTCTGTCAGAAACAAGCATCCCAGGGGGCAGTTTCGCTCCATTAATTCTCGATATTTTCT
                      ____________________________________________________________
consensus             CTCTGTCAGAAACAAGCATCCCAGGGGGCAGTTTCGCTCCATTAATTCTCGATATTTTCT
 
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JMFN035O24+           CCAGGATAAGTAATGCTTCTTCTCGTCTCCCCTTTGCGCATAAAAACCTCGGTGATTCAA
                      ____________________________________________________________
consensus             CCAGGATAAGTAATGCTTCTTCTCGTCTCCCCTTTGCGCATAAAAACCTCGGTGATTCAA
 
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JMFN035O24+           TGGTGAAACCGTAGAACAAAAGAAGCAATGAAGAGGGTATGGAAGAAAACCCAAGTAGCC
JMSF050M17+                           CAAAAGAAGCAATGAAGAGGGTATGGAAGAAAACCCAAGTAGCC
                      ____________________________________________________________
consensus             TGGTGAAACCGTAGAACAAAAGAAGCAATGAAGAGGGTATGGAAGAAAACCCAAGTAGCC
 
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JMFN035O24+           ATCTCCAGCCCAGTTTTGGCATCACAACCCAAGCAAGCGAAGCCTCAAAAATTGTCCCGA
JMSF050M17+           ATNTCCAGCCCAGTTTTGGCATCACAACCCAAGCAAGCGAAGCCTCAAAAATTGTCCCGA
                      ____________________________________________________________
consensus             ATCTCCAGCCCAGTTTTGGCATCACAACCCAAGCAAGCGAAGCCTCAAAAATTGTCCCGA
 
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JMFN035O24+           TCGTCCAGAAAGCCGAAAAAACTACCATCCAAGTGCCTCTATTTGGAGCAGGAATGAACT
JMSF050M17+           TCGTCCAGAAAGCCGAAAAAACTACCATCCAAGTGCCTCTATTTGGAGCAGGAATGAACT
                      ____________________________________________________________
consensus             TCGTCCAGAAAGCCGAAAAAACTACCATCCAAGTGCCTCTATTTGGAGCAGGAATGAACT
 
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JMFN035O24+           CCAAGAACCATGACGAAAGTACAGGGCCTCCTCCTAAGCCAACACCAACTAGACAACGCA
JMSF050M17+           CCAAGAACCATGACGAAAGTACAGGGCCTCCTCNTAAGCCAACACCAACTAGACAACGCA
                      ____________________________________________________________
consensus             CCAAGAACCATGACGAAAGTACAGGGCCTCCTCCTAAGCCAACACCAACTAGACAACGCA
 
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JMFN035O24+           TGATAAT                                                     
JMSF050M17+           TGATAATCAGCACTGTTATATTTGAGGCCATAGAACTTGAGAAACCTGCTAATGCTGTAA
                      ____________________________________________________________
consensus             TGATAATCAGCACTGTTATATTTGAGGCCATAGAACTTGAGAAACCTGCTAATGCTGTAA
 
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JMSF050M17+           TCATTGCTGTCACGAAAAATCCATTCCTCCTTCCATAATTGTCTGAAACAATGCCCCATG
                      ____________________________________________________________
consensus             TCATTGCTGTCACGAAAAATCCATTCCTCCTTCCATAATTGTCTGAAACAATGCCCCATG
 
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JMSF050M17+           TGTAGGCTCCAAATAACATTCCAACAAAAACCATACTAGTAAGTAAGCTCTCTTGATGAG
                      ____________________________________________________________
consensus             TGTAGGCTCCAAATAACATTCCAACAAAAACCATACTAGTAAGTAAGCTCTCTTGATGAG
 
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JMSF050M17+           GAGAAAGATTCCATGCAGACTGCACGGCTGGTCCCACAAAAGAGAGAAGCATCATTTCCA
                      ____________________________________________________________
consensus             GAGAAAGATTCCATGCAGACTGCACGGCTGGTCCCACAAAAGAGAGAAGCATCATTTCCA
 
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JMSF050M17+           TGGCTTCAGAAATCCAACCCATCCCAGCATATATGAGCACAAGAACTTGGAATTTTCCAA
                      ____________________________________________________________
consensus             TGGCTTCAGAAATCCAACCCATCCCAGCATATATGAGCACAAGAACTTGGAATTTTCCAA
 
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JMSF050M17+           AGCCCATAGTAACAAGAGCTTCCTCCACAGTATAGGCATTGCTTTCATCGTCCATCTCGT
                      ____________________________________________________________
consensus             AGCCCATAGTAACAAGAGCTTCCTCCACAGTATAGGCATTGCTTTCATCGTCCATCTCGT
 
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JMSF050M17+           TGAAATCAAAGGAATTCAGGGAAAATGGAAGTAATCTCTTGGTCTTCCTTTCTTCCAATC
                      ____________________________________________________________
consensus             TGAAATCAAAGGAATTCAGGGAAAATGGAAGTAATCTCTTGGTCTTCCTTTCTTCCAATC