| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010D07 | Sequence | 565 | 010930 (5) | ref|XP_009630253.1| | 3e-86 | PREDICTED: UPF0047 protein C4A8.02c [Nicotiana tomentosiformis] | 648 | 010930 (5) | ref|XP_011074041.1| | 1e-83 | PREDICTED: UPF0047 protein C4A8.02c [Sesamum indicum] |
| JMSF031K22 | Sequence | 670 | 010930 (5) | ref|XP_009630253.1| | 4e-49 | PREDICTED: UPF0047 protein C4A8.02c [Nicotiana tomentosiformis] | 668 | 008659 (2) | gb|EYU36615.1| | 5e-14 | hypothetical protein MIMGU_mgv1a014010mg [Erythranthe guttata] |
| JMSF050J22 | Sequence | 709 | 010930 (5) | ref|XP_009630253.1| | 8e-92 | PREDICTED: UPF0047 protein C4A8.02c [Nicotiana tomentosiformis] | 629 | 010930 (5) | ref|XP_009630253.1| | 5e-94 | PREDICTED: UPF0047 protein C4A8.02c [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF010D07- TTGGCTTGAGCAAA
____________________________________________________________
consensus TTGGCTTGAGCAAA
. : . : . : . : . : . :
rJMFF010D07- TTATGTTTGCTATTCCGTGCTAGTAAGTAGCACCAAACCTTTCATAGCCCCATTGTCATA
____________________________________________________________
consensus TTATGTTTGCTATTCCGTGCTAGTAAGTAGCACCAAACCTTTCATAGCCCCATTGTCATA
. : . : . : . : . : . :
rJMFF010D07- TTCAGTGTTGCAACTGTCAGAGATAACAAACCTTGGAGTCAAAAGCAAATAGAGCATTAG
rJMSF050J22- TGCAACTGTCAGAGATAACAAACCTTGGAGTCAAAAGCAAATAGAGCATTAG
____________________________________________________________
consensus TTCAGTGTTGCAACTGTCAGAGATAACAAACCTTGGAGTCAAAAGCAAATAGAGCATTAG
. : . : . : . : . : . :
rJMFF010D07- GAGATAACAAACCCCGGAGTCCAGGCACAATATGTTGAACATAGTTAAATTATTATAGAA
rJMSF050J22- GAGATAACAAACCCCGGAGTCCAGGCACAATATGTTGAACATAGTTAAATTATTATAGAA
JMSF050J22+ CCCCGGAGTCCAGGCACAATATGTTGAACATAGTTAAATTATTATAGAA
____________________________________________________________
consensus GAGATAACAAACCCCGGAGTCCAGGCACAATATGTTGAACATAGTTAAATTATTATAGAA
. : . : . : . : . : . :
rJMFF010D07- AATAACATTGCACACTAAGTTCGAAGCATGCTGTACTAGTGTCCTCTAGCATCTGCGCCT
rJMSF050J22- AATAACATTGCACACTAAGTTCGAAGCATGCTGTACTAGTGTCCTCTAGCATCTGCGCCT
JMSF050J22+ AATAACATTGCACACTAAGTTCGAAGCATGCTGTACTAGTGTCCTCTAGCATCTGCGCCT
____________________________________________________________
consensus AATAACATTGCACACTAAGTTCGAAGCATGCTGTACTAGTGTCCTCTAGCATCTGCGCCT
. : . : . : . : . : . :
rJMFF010D07- CATATACCATTAAGGGTGATAACTATTCTGCGTGGGGTAGCTTCATCCCGATGCTCACAC
rJMSF050J22- CATATACCATTAAGGGTGATAACTATTCTGCGTGGGGTAGCTTCATCCCGATGCTCACAC
JMFF010D07+ GCGTGGGGTAGCTTCATCCCGATGCTCACAC
JMSF050J22+ CATATACCATTAAGGGTGATAACTATTCTGCGTGGGGTAGCTTCATCCCGATGCTCACAC
____________________________________________________________
consensus CATATACCATTAAGGGTGATAACTATTCTGCGTGGGGTAGCTTCATCCCGATGCTCACAC
. : . : . : . : . : . :
rJMFF010D07- AACCATATTCCCTGCCAAGTTCCCATGTTTAGCTTTCCATCTGTTATTGGTATCATGAGG
rJMSF050J22- AACCATATTCCCTGCCAAGTTCCCATGTTTAGCTTTCCATCTGTTATTGGTATCATGAGG
JMFF010D07+ AACCATATTCCCTGCCAAGTTCCCATGTTTAGCTTTCCATCTGTTATTGGTATCATGAGG
JMSF050J22+ AACCATATTCCCTGCCAAGTTCCCATGTTTAGCTTTCCATCTGTTATTGGTATCATGAGG
____________________________________________________________
consensus AACCATATTCCCTGCCAAGTTCCCATGTTTAGCTTTCCATCTGTTATTGGTATCATGAGG
. : . : . : . : . : . :
rJMFF010D07- CTACAGCCAAACATTGATGACTTAATGTGAGCAGGCATGTCATCGGGACCTTCCAGCGTA
rJMSF050J22- CTACAGCCAAACATTGATGACTTAATGTGAGCAGGCATGTCATCGGGACCTTCCAGCGTA
JMSF031K22+ ACCTTCCAGCGTA
JMFF010D07+ CTACAGCCAAACATTGATGACTTAATGTGAGCAGGCATGTCATCGGGACCTTCCAGCGTA
JMSF050J22+ CTACAGCCAAACATTGATGACTTAATGTGAGCAGGCATGTCATCGGGACCTTCCAGCGTA
____________________________________________________________
consensus CTACAGCCAAACATTGATGACTTAATGTGAGCAGGCATGTCATCGGGACCTTCCAGCGTA
. : . : . : . : . : . :
rJMFF010D07- TGTTTCCAAGGTGCAGATACTCCCTCTGGAACAATCCTGGTCAAAAATGTTTCAGTGTCA
rJMSF050J22- TGTTTCCAAGGTGCAGATACTCCCTCTGGAACAATCCTGGTCAAAAATGTTTCAGTGTCA
JMSF031K22+ TGTTTCCAAGGTGCAGATACTCCCTCTGGAACAATCCTGGTCAAAAATGTTTCAGTGTCA
JMFF010D07+ TGTTTCCAAGGTGCAGATACTCCCTCTGGAACAATCCTGGTCAAAAATGTTTCAGTGTCA
JMSF050J22+ TGTTTCCAAGGTGCAGATACTCCCTCTGGAACAATCCTGGTCAAAAATGTTTCAGTGTCA
____________________________________________________________
consensus TGTTTCCAAGGTGCAGATACTCCCTCTGGAACAATCCTGGTCAAAAATGTTTCAGTGTCA
. : . : . : . : . : . :
rJMFF010D07- TCTCGAACGTCTGAGTCATAATTTTCATTTATGGTCAAAGAAGCACTTGTATGTTGCAGA
rJMSF050J22- TCTCGAACGTCTGAGTCATAATTTTCATTTATGGTCAAAGAAGCACTTGTATGTTGCAGA
JMSF031K22+ TCTCGAACGTCTGAGTCATAATTTTCATTTATGGTCAAAGAAGCACTTGTATGTTGCAGA
JMFF010D07+ TCTCGAACGTCTGAGTCATAATTTTCATTTATGGTCAAAGAAGCACTTGTATGTTGCAGA
JMSF050J22+ TCTCGAACGTCTGAGTCATAATTTTCATTTATGGTCAAAGAAGCACTTGTATGTTGCAGA
____________________________________________________________
consensus TCTCGAACGTCTGAGTCATAATTTTCATTTATGGTCAAAGAAGCACTTGTATGTTGCAGA
. : . : . : . : . : . :
rJMFF010D07- AAAAGTTGAGCAAGGCCGCATTTGAATCCTGATAAATCTTGACCAATTTCTTTCAGAATC
rJMSF050J22- AAAAGTTGAGCAAGGCCGCATTTGAATCCTGATAAATCTTGACCAATTTCTTTCAGAATC
JMSF031K22+ AAAAGTTGAGCAAGGCCGCATTTGAATCCTGATAAATCTTGACCAATTTCTTTCAGAATC
JMFF010D07+ AAAAGTTGAGCAAGGCCGCATTTGAATCCTGATAAATCTTGACCAATTTCTTTCAGAATC
JMSF050J22+ AAAAGTTGAGCAAGGCCGCATTTGAATCCTGATAAATCTTGACCAATTTCTTTCAGAATC
____________________________________________________________
consensus AAAAGTTGAGCAAGGCCGCATTTGAATCCTGATAAATCTTGACCAATTTCTTTCAGAATC
. : . : . : . : . : . :
rJMFF010D07- TTAGAGGTAACAAGGTGACATCCCCGTGTTTGAG
rJMSF050J22- TTAGAGGTAACAAGGTGACATCCCCGTGTTTGAGGGGGAAGGGTTATGGTTTTCTGAGCC
JMSF031K22+ TTAGAGGTAACAAGGTGACATCCCCGTGTTTGAGGGGGAAGAGTTATGGTTTTCTGAGCC
JMFF010D07+ TTAGAGGTAACAAGGTGACATCCCCGTGTTTGAGGGGGAAGGGTTATGGTTTTCTGAGCC
JMSF050J22+ TTAGAGGTAACAAGGTGACATCCCCGTGTTTGAGGGGGAAGGGTTATGGTTTTCTGAGCC
____________________________________________________________
consensus TTAGAGGTAACAAGGTGACATCCCCGTGTTTGAGGGGGAAGGGTTATGGTTTTCTGAGCC
. : . : . : . : . : . :
rJMSF050J22- CACCTGGGTGCGGAAGCCATGGAAATGGGGGAGGAAG
JMSF031K22+ CACCTGGGTGCGGAAGCCATGGAAATGGGGGAGGAAGAAGAAGAAGAAGGATCGTCAATT
JMFF010D07+ CACCTGGGTGCGGAAGCCATGGAAATGGGGGAGGAAGAAGAAGAAGAAGGATCGTCAATT
JMSF050J22+ CACCTGGGTGCGGAAGCCATGGAAATGGGGGAGGAAGAAGAAGAAGAAGGATCGTCAATT
____________________________________________________________
consensus CACCTGGGTGCGGAAGCCATGGAAATGGGGGAGGAAGAAGAAGAAGAAGGATCGTCAATT
. : . : . : . : . : . :
JMSF031K22+ GCTGTTGTTGTCGACTGAGAAACAACGATTCTGGTTTTGATAGGCCTAGGCCTAGCGCCA
JMFF010D07+ GCTGTTGTTGTCGACTGAGAAACAACGATTCTGGTTTTGATAGGCCTAGGCCTAGCGCCA
JMSF050J22+ GCTGTTGTTGTCGACTGAGAAACAACGATTCTGGTTTTGATAGGCCTAGGCCTAGCGCCA
____________________________________________________________
consensus GCTGTTGTTGTCGACTGAGAAACAACGATTCTGGTTTTGATAGGCCTAGGCCTAGCGCCA
. : . : . : . : . : . :
JMSF031K22+ ATTCTCAACTGCAAGTGCGCCGTCGATACTAGTCCGGAAGATGCCAGC
JMFF010D07+ ATTCTCAACTGCAAGTGCGCCGTCGATACTAGTCCGGAAGATGCCAGC
JMSF050J22+ ATTCTCAACTGCAAGTGCGCCGTCGATACTAGTCCGGAAGATGCCAGCATCTCTAATTTC
____________________________________________________________
consensus ATTCTCAACTGCAAGTGCGCCGTCGATACTAGTCCGGAAGATGCCAGCATCTCTAATTTC