| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049M09 | Sequence | 482 | 010929 (6) | ref|XP_009784871.1| | 4e-51 | PREDICTED: histidinol-phosphate aminotransferase, chloroplastic [Nicotiana sylv | 498 | 010929 (6) | ref|XP_009612435.1| | 2e-75 | PREDICTED: histidinol-phosphate aminotransferase, chloroplastic [Nicotiana tome |
| JMSF050I04 | Sequence | 696 | 010929 (6) | ref|XP_009612435.1| | 7e-96 | PREDICTED: histidinol-phosphate aminotransferase, chloroplastic [Nicotiana tome | 764 | 010929 (6) | gb|AAL87150.1|AF480496_4 | 2e-111 | putative histidinol phosphate aminotransferase [Oryza sativa Japonica Group] |
| JMSF052J04 | Sequence | 375 | 010929 (6) | sp|Q9FEW2.1|HIS8_NICPL | 3e-20 | RecName: Full=Histidinol-phosphate aminotransferase, chloroplastic; AltName: Fu | 338 | 010929 (6) | sp|Q9FEW2.1|HIS8_NICPL | 2e-20 | RecName: Full=Histidinol-phosphate aminotransferase, chloroplastic; AltName: Fu |
This contig is upended
. : . : . : . : . : . :
JMSF052J04+ TTTTTTTTTTGCACGTATAAACAGTTACATTGCAACGTA
____________________________________________________________
consensus TTTTTTTTTTGCACGTATAAACAGTTACATTGCAACGTA
. : . : . : . : . : . :
rJMSF052J04- CAATATTATTTGTGTGCAAATGTCCACCAAT-GTAACTCTATTATCTCA
JMSF052J04+ ACTCTGGTTCACAATATTATTTGTGTGCAAATGTCCACCAAT-GTAACTCTATTATCTCA
rJMSF050I04- ATATTATTTGTGTGCAAATGTCCACCAATGGTAACTCTATTATCTCA
____________________________________________________________
consensus ACTCTGGTTCACAATATTATTTGTGTGCAAATGTCCACCAAT-GTAACTCTATTATCTCA
. : . : . : . : . : . :
rJMSF052J04- AATAAAAGTACAAATACAAATGGGCTTACAATGAGGCTACCAAGTGTTAAATTCACCAGT
JMSF052J04+ AATAAAAGTACAAATACAAATGGGCTTACAATGAGGCTACCAAGTGTTAAATTCACCAGT
rJMSF050I04- AATAAAAGTACAAATACAAATGGGCTTACAATGAGGCTACCAAGTGTTAAATTCACCAGT
____________________________________________________________
consensus AATAAAAGTACAAATACAAATGGGCTTACAATGAGGCTACCAAGTGTTAAATTCACCAGT
. : . : . : . : . : . :
rJMSF052J04- TTGCCGGGATTGCCTTAGTAGCCAGGGAGGAGGTGCGTTTTGTATCTTCAATACCTTCCG
JMSF052J04+ TTGCCGGGATTGCCTTAGTAGCCAGGGAGGAGGTGCGTTTTGTATCTTCAATACCTTCCG
rJMSF050I04- TTGCCGGGATTGCCTTAGTAGCCAGGGAGGAGGTGCGTTTTGTATCTTCAATACCTTCCG
____________________________________________________________
consensus TTGCCGGGATTGCCTTAGTAGCCAGGGAGGAGGTGCGTTTTGTATCTTCAATACCTTCCG
. : . : . : . : . : . :
rJMSF052J04- AGATCAATAGAAGTGCTTTAGGCCCTTCATCAGAACATCGGTGTGCTCGGGTTTTCCAAC
JMSF052J04+ AGATCAATAGAAGTGCTTTAGGCCCTTCATCAGAACATCGGTGTGCTCGGGTTTTCCAAC
rJMSF050I04- AGATCAATAGAAGTGCTTTAGGCCCTTCATCAGAACATCGGTGTGCTCGGGTTTTCCAAC
____________________________________________________________
consensus AGATCAATAGAAGTGCTTTAGGCCCTTCATCAGAACATCGGTGTGCTCGGGTTTTCCAAC
. : . : . : . : . : . :
rJMSF052J04- AGAGACACGAACAAAGCCCCGTAGTTCCTTGTTATCATAGTGACGAATCATCACGCCCAT
JMSF052J04+ AGAGACACGAACAAAGCCCCGTAGTTCCTTGTTATCATAGTGACGAATCATCACGCCCAT
rJMSF050I04- AGAGACACGAACAAAGCCCCGTAGTTCCTTGTTATCATAGTGACGAATCATCACGCCCAT
____________________________________________________________
consensus AGAGACACGAACAAAGCCCCGTAGTTCCTTGTTATCATAGTGACGAATCATCACGCCCAT
. : . : . : . : . : . :
rJMSF052J04- CAATGCAAGATCTTCCTTTAATTTTTTAGCATCCATT
JMSF052J04+ CAATGCAAGATCTTCCTTTAATTTTTTAGCATCCATT
rJMSF050I04- CAATGCAAGATCTTCCTTTAATTTTTTAGCATCCATTGTAGATGCAACCTTGCAAAGAAT
____________________________________________________________
consensus CAATGCAAGATCTTCCTTTAATTTTTTAGCATCCATTGTAGATGCAACCTTGCAAAGAAT
. : . : . : . : . : . :
rJMSF050I04- GAAATTAGAGTGGCTTGGATACGGGTTAAGAAATGGTACTTCTTTCAAGAGATTATAGAG
____________________________________________________________
consensus GAAATTAGAGTGGCTTGGATACGGGTTAAGAAATGGTACTTCTTTCAAGAGATTATAGAG
. : . : . : . : . : . :
rJMSF050I04- CCTTTCCCGCTCCTGTACAAGTGCAACTTTAACTTTCTCGAGATAGTCAGGATTCTGTAA
____________________________________________________________
consensus CCTTTCCCGCTCCTGTACAAGTGCAACTTTAACTTTCTCGAGATAGTCAGGATTCTGTAA
. : . : . : . : . : . :
rJMSF050I04- TGCGGTACATGCAGCAATCTCAGCAGCAACAGATACATTATATGGTTGCTTTGCTCTCCA
____________________________________________________________
consensus TGCGGTACATGCAGCAATCTCAGCAGCAACAGATACATTATATGGTTGCTTTGCTCTCCA
. : . : . : . : . : . :
rJMSF050I04- AAGGTACTCAATAATGCTCCGAGGAAATGCTCCATATCCGACACGGAGTCCAGCTAGACC
____________________________________________________________
consensus AAGGTACTCAATAATGCTCCGAGGAAATGCTCCATATCCGACACGGAGTCCAGCTAGACC
. : . : . : . : . : . :
rJMSF050I04- AGCTCTTTTGCTGAATGTCCGTAGAACAATGAGATTTTCATGCTTCTTCACCCATGTCAT
____________________________________________________________
consensus AGCTCTTTTGCTGAATGTCCGTAGAACAATGAGATTTTCATGCTTCTTCACCCATGTCAT
. : . : . : . : . : . :
rJMSF050I04- CTTAGACCCAATTTCCGAAAATTCAATGTATGCTTCGTCAAGTACAACCAATATTGGCAT
____________________________________________________________
consensus CTTAGACCCAATTTCCGAAAATTCAATGTATGCTTCGTCAAGTACAACCAATATTGGCAT
. : . : . : . : . : . :
rJMSF050I04- ATTAAGTATTTTCTGTAGATCTGTATCATTGATTATACTCCCATCTGGGTTATTAGG
rJMFF049M09- TTTTCTGTAGATCTGTATCATTGATTATACTCCCATCTGGGTTATTAGGGGA
____________________________________________________________
consensus ATTAAGTATTTTCTGTAGATCTGTATCATTGATTATACTCCCATCTGGGTTATTAGGGGA
. : . : . : . : . : . :
rJMFF049M09- TGTCAGAAATATGCATTTTGGTTTTTCCTTCTCAACAACTTCAGCAATCCTTTCCACATC
____________________________________________________________
consensus TGTCAGAAATATGCATTTTGGTTTTTCCTTCTCAACAACTTCAGCAATCCTTTCCACATC
. : . : . : . : . : . :
rJMFF049M09- CAAGCTAAAGTCTGGGTTTCGAGGTACACTAGATAACATGTGCCCCATTTACAGCCGCAT
JMSF050I04+ TTACAGCCGCAT
____________________________________________________________
consensus CAAGCTAAAGTCTGGGTTTCGAGGTACACTAGATAACATGTGCCCCATTTACAGCCGCAT
. : . : . : . : . : . :
rJMFF049M09- CAAATTCATACATTGTAAATGTTGGTGGACAGTCAACAATTTTTTCTCCAGGATCCAATA
JMSF050I04+ CAAATTCATACATTGTAAATGTTGGTGGACAGTCAACAATTTTTTCTCCAGGATCCAATA
____________________________________________________________
consensus CAAATTCATACATTGTAAATGTTGGTGGACAGTCAACAATTTTTTCTCCAGGATCCAATA
. : . : . : . : . : . :
rJMFF049M09- CACACCGCATTATCAAATCAATCAGTTCATCTGCACCACACCCAGCAAGAATATACTCAG
JMSF050I04+ CACACCGCATTATCAAATCAATCAGTTCATCTGCACCACACCCAGCAAGAATATACTCAG
____________________________________________________________
consensus CACACCGCATTATCAAATCAATCAGTTCATCTGCACCACACCCAGCAAGAATATACTCAG
. : . : . : . : . : . :
rJMFF049M09- ATTCAAGTCCAGAATCTTCAGAAAGTGCAGCACGCAATCTACGACTTTCAGGATCGGGAT
JMFF049M09+ ATCGGGAT
JMSF050I04+ ATTCAAGTCCAGAATCTTCAGAAAGTGCAGCACGCAATCTACGACTTTCAGGATCGGGAT
____________________________________________________________
consensus ATTCAAGTCCAGAATCTTCAGAAAGTGCAGCACGCAATCTACGACTTTCAGGATCGGGAT
. : . : . : . : . : . :
rJMFF049M09- AAATATAGGGGAATTCTATAGACCCCAAAGCCTCTAATACCTCAGGAGGCGGACCATACG
JMFF049M09+ AAATATAGGGGAATTCTATAGACCCCAAAGCCTCTAATACCTCAGGAGGCGGACCATACG
JMSF050I04+ AAATATAGGGGAATTCTATAGACCCCAAAGCCTCTAATACCTCAGGAGGCGGACCATACG
____________________________________________________________
consensus AAATATAGGGGAATTCTATAGACCCCAAAGCCTCTAATACCTCAGGAGGCGGACCATACG
. : . : . : . : . : . :
rJMFF049M09- GGTTCTCATTGGCATCTAATTTTATAATATCCTCAGGCTTCCTGCCAAGTCGAGCAGATA
JMFF049M09+ GGTTCTCATTGGCATCTAATTTTATAATATCCTCAGGCTTCCTGCCAAGTCGAGCAGATA
JMSF050I04+ GGTTCTCATTGGCATCTAATTTTATAATATCCTCAGGCTTCCTGCCAAGTCGAGCAGATA
____________________________________________________________
consensus GGTTCTCATTGGCATCTAATTTTATAATATCCTCAGGCTTCCTGCCAAGTCGAGCAGATA
. : . : . : . : . : . :
rJMFF049M09- ATACCTCGAAAGGCAAA
JMFF049M09+ ATACCTCGAAAGGCAAAATGGGCTGATAGGGCTTGAGAATCCGGAGATGGGGACGGATAA
JMSF050I04+ ATACCTCGAAAGGCAAAATGGGCTGATAGGGCTTGAGAGTCCGGAGATGGGGACGGATAA
____________________________________________________________
consensus ATACCTCGAAAGGCAAAATGGGCTGATAGGGCTTGAGAGTCCGGAGATGGGGACGGATAA
. : . : . : . : . : . :
JMFF049M09+ AAGAAGCCCCATCGACAACTTGTCTTGGCTGACTCTCCTCCTTGACCGGCACAGAAGAAG
JMSF050I04+ AAGAAGCCCCATCGACAACTTGTCTTGGCTGACTCTCCTCCTTGACCGGCACAGAAGAAG
____________________________________________________________
consensus AAGAAGCCCCATCGACAACTTGTCTTGGCTGACTCTCCTCCTTGACCGGCACAGAAGAAG
. : . : . : . : . : . :
JMFF049M09+ ATGCCATGACGGCGATTCTCCTCCTCCAATTTGCTTCAATTCCGCGGCAGGGTCTGGACC
JMSF050I04+ ATGCCATGACGGCGATTCTCCTCCTCCAATTTGCTTCAATTCCGCGGCAGGGTCTGGACC
____________________________________________________________
consensus ATGCCATGACGGCGATTCTCCTCCTCCAATTTGCTTCAATTCCGCGGCAGGGTCTGGACC
. : . : . : . : . : . :
JMFF049M09+ TGGCAATGCAAATTGATGAAGTATTGCAGAAATCAATCGCCCCCATGAATTAGTATCAAT
JMSF050I04+ TGGCAATGCAAATTGATGAAGTATTGCAGAAATCAATCGCCCCCATGAATTAGTATCAAT
____________________________________________________________
consensus TGGCAATGCAAATTGATGAAGTATTGCAGAAATCAATCGCCCCCATGAATTAGTATCAAT
. : . : . : . : . : . :
JMFF049M09+ CGTCCC
JMSF050I04+ CGTCCCCTGCATTTCACATCAATACTTTCAGTAAAATAAGCATTATTATCATTTGTCATG
____________________________________________________________
consensus CGTCCCCTGCATTTCACATCAATACTTTCAGTAAAATAAGCATTATTATCATTTGTCATG
. : . : . : . : . : . :
JMSF050I04+ ATCACGAATGCAGGATAAGTGGGAAAGGAGAATTTGTACGTGAACTGAAGTTGGCGGAGC
____________________________________________________________
consensus ATCACGAATGCAGGATAAGTGGGAAAGGAGAATTTGTACGTGAACTGAAGTTGGCGGAGC