| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032J10 | Sequence | 580 | 010925 (8) | ref|XP_004248334.1| | 2e-93 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Sola | 596 | 010925 (8) | ref|XP_009762484.1| | 6e-96 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Nico |
| JMFF042D09 | Sequence | 643 | 010925 (8) | ref|XP_004248334.1| | 4e-105 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Sola | 631 | 010925 (8) | ref|XP_009762484.1| | 1e-85 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Nico |
| JMSF024N02 | Sequence | 631 | 010925 (8) | ref|XP_004248334.1| | 3e-107 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Sola | 695 | 010925 (8) | ref|XP_009762484.1| | 1e-125 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Nico |
| JMSF050E01 | Sequence | 637 | 010925 (8) | ref|XP_004248334.1| | 8e-107 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Sola | 692 | 010925 (8) | ref|XP_009762484.1| | 8e-125 | PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Nico |
This contig is upended
. : . : . : . : . : . :
rJMFF042D09- CCTTATGGCGGA
____________________________________________________________
consensus CCTTATGGCGGA
. : . : . : . : . : . :
rJMFF042D09- TCACCCTGGAGAGTTTTTTTTTTTTTTTTACAAAATATTATTATTTATTTTATACTTTAA
____________________________________________________________
consensus TCACCCTGGAGAGTTTTTTTTTTTTTTTTACAAAATATTATTATTTATTTTATACTTTAA
. : . : . : . : . : . :
rJMFF042D09- TATCATGGGACCATGCTGTATGATTTTGAATAACCTAAAAGCCAAAGGTTCAACAATAAT
rJMFF032J10- TGGGACCATGCTGTATGATTTTGAATAACCTAAAAGCCAAAGGTTCAACAATAAT
rJMSF050E01- GTATGATTTTGAATAACCTAAAAGCCAAAGGTTCAACAATAAT
rJMSF024N02- GTATGATTTTGAATAACCTAAAAGCCAAAGGTTCAACAATAAT
____________________________________________________________
consensus TATCATGGGACCATGCTGTATGATTTTGAATAACCTAAAAGCCAAAGGTTCAACAATAAT
. : . : . : . : . : . :
rJMFF042D09- TGACAAAAGAACTACATACACTACAAAACAACAATATAATACTTCAGAAGACACAAAACC
rJMFF032J10- TGACAAAAGAACTACATACACTACAAAACAACAATATAATACTTCAGAAGACACAAAACC
rJMSF050E01- TGACAAAAGAACTACATACACTACAAAACAACAATATAATACTTCAGAAGACACAAAACC
rJMSF024N02- TGACAAAAGAACTACATACACTACAAAACAACAATATAATACTTCAGAAGACACAAAACC
____________________________________________________________
consensus TGACAAAAGAACTACATACACTACAAAACAACAATATAATACTTCAGAAGACACAAAACC
. : . : . : . : . : . :
rJMFF042D09- AGCAATACTTCACTGTCTCTTTGGATACTCCCTTGGTCCAAATATGGTTGATCCAATTCT
rJMFF032J10- AGCAATACTTCACTGTCTCTTTGGATACTCCCTTGGTCCAAATATGGTTGATCCAATTCT
rJMSF050E01- AGCAATACTTCACTGTCTCTTTGGATACTCCCTTGGTCCAAATATGGTTGATCCAATTCT
rJMSF024N02- AGCAATACTTCACTGTCTCTTTGGATACTCCCTTGGTCCAAATATGGTTGATCCAATTCT
____________________________________________________________
consensus AGCAATACTTCACTGTCTCTTTGGATACTCCCTTGGTCCAAATATGGTTGATCCAATTCT
. : . : . : . : . : . :
rJMFF042D09- GACATTGGTGCTGCCCATTTCTATCGCTTGCTCAAAGTCCCCAGACATGCCCATTGACAG
rJMFF032J10- GACATTGGTGCTGCCCATTTCTATCGCTTGCTCAAAGTCCCCAGACATGCCCATTGACAG
rJMSF050E01- GACATTGGTGCTGCCCATTTCTATCGCTTGCTCAAAGTCCCCAGACATGCCCATTGACAG
rJMSF024N02- GACATTGGTGCTGCCCATTTCTATCGCTTGCTCAAAGTCCCCAGACATGCCCATTGACAG
____________________________________________________________
consensus GACATTGGTGCTGCCCATTTCTATCGCTTGCTCAAAGTCCCCAGACATGCCCATTGACAG
. : . : . : . : . : . :
rJMFF042D09- CTCACATTGGGCCTCTGTCATCCCAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
rJMFF032J10- CTCACATTGGGCCTCTGTCATCCCAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
rJMSF050E01- CTCACATTGGGCCTCTGTCATCCCAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
rJMSF024N02- CTCACATTGGGCCTCTGTCATCCCAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
JMSF024N02+ CCAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
JMFF042D09+ GTCATCCCAAGCACTTGNCAAACCTCAGTTCTACAATTCCATAG
JMSF050E01+ CAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
____________________________________________________________
consensus CTCACATTGGGCCTCTGTCATCCCAAGCACTTTGCAAACCTCAGTTCTACAATTCCATAG
. : . : . : . : . : . :
rJMFF042D09- CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
rJMFF032J10- CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
rJMSF050E01- CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
rJMSF024N02- CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
JMSF024N02+ CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
JMFF042D09+ CATCTGNAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
JMFF032J10+ GTTGATGTATAGTCTGGTCTTCCAATNGTCATTAAGCCAGA
JMSF050E01+ CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
____________________________________________________________
consensus CATCTTGAAGTTTTCTGGAGTTGATGTATAGTCTGGTCTTCCAATTGTCATTAAGCCAGA
. : . : . : . : . : . :
rJMFF042D09- GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
rJMFF032J10- GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
rJMSF050E01- GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
rJMSF024N02- GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
JMSF024N02+ GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
JMFF042D09+ GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
JMFF032J10+ GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
JMSF050E01+ GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
____________________________________________________________
consensus GAACTCAAGATTTGGGCAATTCAGCTTGACATGCTTAGCAAGTTCTATAGAATATGATGG
. : . : . : . : . : . :
rJMFF042D09- ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCNAAACCTTTAAGGG
rJMFF032J10- ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
rJMSF050E01- ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
rJMSF024N02- ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
JMSF024N02+ ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
JMFF042D09+ ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
JMFF032J10+ ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
JMSF050E01+ ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
____________________________________________________________
consensus ATCTACCCCAGATTTTGACTCTTCTCCACTGGTATTCACTTGGACCAAAACCTTTAAGGG
. : . : . : . : . : . :
rJMFF042D09- CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
rJMFF032J10- CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
rJMSF050E01- CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
rJMSF024N02- CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
JMSF024N02+ CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
JMFF042D09+ CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
JMFF032J10+ CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
JMSF050E01+ CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
____________________________________________________________
consensus CTGTCGGCCAATGCTTGAAATTGCACGATCAAGATGATTTGCAACCTTTTCATTATCTAC
. : . : . : . : . : . :
rJMFF042D09- ACCCTGTACCATGGCTAAA
rJMFF032J10- ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
rJMSF050E01- ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
rJMSF024N02- ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
JMSF024N02+ ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
JMFF042D09+ ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
JMFF032J10+ ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
JMSF050E01+ ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
____________________________________________________________
consensus ACCCTGTACCATGGCTAAATTGGGAACAGCAGTTAGCAGTGATTTTACTTTATTGCTCTG
. : . : . : . : . : . :
rJMFF032J10- C
rJMSF050E01- CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
rJMSF024N02- CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
JMSF024N02+ CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
JMFF042D09+ CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
JMFF032J10+ CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
JMSF050E01+ CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
____________________________________________________________
consensus CAAATGCCCAATAAAATGCCACTCGATATCCCCAGGAAGCTCAGGAGCCTTTTGGATAAT
. : . : . : . : . : . :
rJMSF050E01- CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATCGTATACC
rJMSF024N02- CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATCGTATACCTGG
JMSF024N02+ CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATCGTATACCTGGCGGATGAG
JMFF042D09+ CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATCGTATACCTGGCGGATGAG
JMFF032J10+ CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATCGTATACCTGGCGGATGAG
JMSF050E01+ CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATNGTATACCTGGCGGATGAG
____________________________________________________________
consensus CTCTTGAACATAGTTCTCACCGAAACAGGTATGCCCAGCATCGTATACCTGGCGGATGAG
. : . : . : . : . : . :
JMSF024N02+ AGAGGCGGGCTTCGTCTTGCCCACCGCCACTACTCTCACGTCATCGGCACGGCGGCCTGA
JMFF042D09+ AGAGGCGGGCTTCGTCTTGCCCACCGCCACTACTCTCACGTCATCGGCACGGCGGCCTGA
JMFF032J10+ AGAGGCGGGCTTCGTCTTGCCCACCGCCACTACTCTCACGTCATCGGCACGGCGGCCTGA
JMSF050E01+ AGAGGCGGGCTTCGTCTTGCCCACCGCCACTACTCTCACGTCATCGGCACGGCGGCCTGA
____________________________________________________________
consensus AGAGGCGGGCTTCGTCTTGCCCACCGCCACTACTCTCACGTCATCGGCACGGCGGCCTGA
. : . : . : . : . : . :
JMSF024N02+ CCTCTCCGCGGCAAGGCGGACACGATGGAGCACCGCCCGTAGCGCGGTGGCAGCTGCATT
JMFF042D09+ CCTCTCCGCGGCAAGGCGGACACGATGGAGCACCGCCCGTAGCGCGGTGGCAGCTGCATT
JMFF032J10+ CCTCTCCGCGGCAAGGCGGACACGATGGAGCACCGCCCGTAGCGCGGTGGCAGCTGCATT
JMSF050E01+ CCTCTCCGCGGCAAGGCGGACACGATGGAGCACCGCCCGTAGCGCGGTGGCAGCTGCATT
____________________________________________________________
consensus CCTCTCCGCGGCAAGGCGGACACGATGGAGCACCGCCCGTAGCGCGGTGGCAGCTGCATT
. : . : . : . : . : . :
JMSF024N02+ CTCCACAGCCGGAGCAGCCATTAACTACCGTTCTCTGTGTTGTCTGTGCCCT
JMFF042D09+ CTCCACAGCCGGAGCAGCCATTAACTACCGTTCTCTGTGTTGTCTGTGCCCT
JMFF032J10+ CTCCACAGCCGGAGCAGCCATTAACTACCGTTCTCTGTGTTGTCTGTGCCCT
JMSF050E01+ CTCCACAGCCGGAGCAGCCATTAACTACCGTTCTCTGTGTTGTCTGTGCCCTGAATCCTC
____________________________________________________________
consensus CTCCACAGCCGGAGCAGCCATTAACTACCGTTCTCTGTGTTGTCTGTGCCCTGAATCCTC