Contig 010924:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF050D01+                        GGCCAAATATAGTCTACTAGTCAGTCTGTGTCCACTCGATCATCAC
JMSF050D01-                         GGCCAAATATAGTCTACTAGTCAGTCTGTGTCCACTCGATCATCAC
                      ____________________________________________________________
consensus                           GGCCAAATATAGTCTACTAGTCAGTCTGTGTCCACTCGATCATCAC
 
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rJMSF050D01+          TACCTATTATATTCATCACATCAGATCAGATCTGGAGAAATTATTAAACAATAATGGTTT
JMSF050D01-           TACCTATTATATTCATCACATCAGATCAGATCTGGAGAAATTATTAAACAATAATGGTTT
                      ____________________________________________________________
consensus             TACCTATTATATTCATCACATCAGATCAGATCTGGAGAAATTATTAAACAATAATGGTTT
 
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rJMSF050D01+          GGATTAAACATTNTTCTTCATNNTNTTCTTCTTCTGTTGTTACCACCTTCTCCATACTTG
JMSF050D01-           GGATTAAACATTCTTCTTCATCTTCTTCTTCTTCTGTTGTTACCACCTTCTCCATACTTG
                      ____________________________________________________________
consensus             GGATTAAACATTCTTCTTCATCTTCTTCTTCTTCTGTTGTTACCACCTTCTCCATACTTG
 
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rJMSF050D01+          TATCGTTGTCTCTCCATTTTCTTACTACTTTCTCTTCCTCCTCATCAGATGAGGGTAGTG
JMSF050D01-           TATCGTTGTCTCTCCATTTTCTTACTACTTTCTCTTCCTCCTCATCAGATGAGGGTAGTG
                      ____________________________________________________________
consensus             TATCGTTGTCTCTCCATTTTCTTACTACTTTCTCTTCCTCCTCATCAGATGAGGGTAGTG
 
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rJMSF050D01+          TGTTTGTTTCTCAGTATTCCACTGGGACTGGGATTGGGAGGAACCTCCTTCAGGCCAAGA
JMSF050D01-           TGTTTGTTTCTCAGTATTCCACTGGGACTGGGATTGGGAGGAACCTCCTTCAGGCCAAGA
                      ____________________________________________________________
consensus             TGTTTGTTTCTCAGTATTCCACTGGGACTGGGATTGGGAGGAACCTCCTTCAGGCCAAGA
 
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rJMSF050D01+          TACCTTGTAACAAGAACTTTGAGTCTGAGAACTATACCATCCTCACCAGCCAATGCAAAG
JMSF050D01-           TACCTTGTAACAAGAACTTTGAGTCTGAGAACTATACCATCCTCACCAGCCAATGCAAAG
                      ____________________________________________________________
consensus             TACCTTGTAACAAGAACTTTGAGTCTGAGAACTATACCATCCTCACCAGCCAATGCAAAG
 
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rJMSF050D01+          CTCCATACCAACAAATACAGCCATGTTGCGACGCCTTTACACAGTTTGCCTGTCCTTTTG
JMSF050D01-           CTCCATACCAACAAATACAGCCATGTTGCGACGCCTTTACACAGTTTGCCTGTCCTTTTG
                      ____________________________________________________________
consensus             CTCCATACCAACAAATACAGCCATGTTGCGACGCCTTTACACAGTTTGCCTGTCCTTTTG
 
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rJMSF050D01+          CCCAATTTTTGAATGATAGATCTACCAACTGTTCCGATGTGATGTTCACCTACATCGACC
JMSF050D01-           CCCAATTTTTGAATGATAGATCTACCAACTGTTCCGATGTGATGTTCACCTACATCGACC
                      ____________________________________________________________
consensus             CCCAATTTTTGAATGATAGATCTACCAACTGTTCCGATGTGATGTTCACCTACATCGACC
 
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rJMSF050D01+          AAAAAGGAGGTTTCCCAAATGGCCTTTTCACCGGTTGCAAAGGAGATCAAACTGGCCTAA
JMSF050D01-           AAAAAGGAGGTTTCCCAAATGGCCTTTTCACCGGTTGCAAAGGAGATCAAACTGGCCTAA
                      ____________________________________________________________
consensus             AAAAAGGAGGTTTCCCAAATGGCCTTTTCACCGGTTGCAAAGGAGATCAAACTGGCCTAA
 
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rJMSF050D01+          TTTGCCCTACACCACCACCTGATTTAACTGCCGGAGTCACAGTGGGATTGGGGGCACCCC
rJMSF015M14+                                      TGCCGGAGTCACAGTGGGATTGGGGGCACCCC
JMSF050D01-           TTTGCCCTACACCACCACCTGATTTAACTGCCGGAGTCACAGTGGGATTGGGGGCACCCC
                      ____________________________________________________________
consensus             TTTGCCCTACACCACCACCTGATTTAACTGCCGGAGTCACAGTGGGATTGGGGGCACCCC
 
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rJMSF050D01+          CACCCATTATTCAATTCCTGTTTTATACTACAACCCTCGCTGTAACTTTTTTATTTTTAA
rJMSF015M14+          CACCCATTATTCAANTCCTGTTTTATANTACAACCCTCGCNGTAACTNTTTTATTTTTAA
JMSF050D01-           CACCCATTATTCAATTCCTGTTTTATACTACAACCCTCGCTGTAACTTTTTTATTTTTAA
                      ____________________________________________________________
consensus             CACCCATTATTCAATTCCTGTTTTATACTACAACCCTCGCTGTAACTTTTTTATTTTTAA
 
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rJMSF050D01+          TCTCTTAAATCATTA                                             
rJMSF015M14+          TCTCTTAAANCATTA                                             
JMSF050D01-           TCTCTTAAATCATTATTATTATGTCANGTGTAATTCATGAATATATATTCACAAGTCTAA
                      ____________________________________________________________
consensus             TCTCTTAAATCATTATTATTATGTCANGTGTAATTCATGAATATATATTCACAAGTCTAA