Contig 010923:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049D12Sequence672010923 (4)gb|EYU39934.1|3e-98hypothetical protein MIMGU_mgv1a010546mg [Erythranthe guttata] gb|EYU39935.1| hy758010923 (4)ref|XP_011078824.1|1e-77PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic [Sesamum
JMSF050B14Sequence703010923 (4)ref|XP_002322666.2|2e-100hypothetical protein POPTR_0016s04520g [Populus trichocarpa] gb|ABK96151.1| unkn753010923 (4)emb|CDP10137.1|6e-73unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF050B14-                                               TGGTCATTATCCAGAGAAACAAA
                      ____________________________________________________________
consensus                                                  TGGTCATTATCCAGAGAAACAAA
 
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rJMSF050B14-          CAACCATACAACGGTAAAATATTCTACAAGTGAAGTTACCAACCCCAGTCACAACCTTTC
rJMSF049D12-                       GTAAAATATTCTACAAGTGAAGTTACCAACCCCAGTCACAACCTTTC
                      ____________________________________________________________
consensus             CAACCATACAACGGTAAAATATTCTACAAGTGAAGTTACCAACCCCAGTCACAACCTTTC
 
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rJMSF050B14-          TATTCGTTACAAAAATCAAATACTTTACAGTCAACAAGCTCATATAATTGTGGAAGGTTT
rJMSF049D12-          TATTCGTTACAAAAATCAAATACTTTACAGTCAACAAGCTCATATAATTGTGGAAGGTTT
                      ____________________________________________________________
consensus             TATTCGTTACAAAAATCAAATACTTTACAGTCAACAAGCTCATATAATTGTGGAAGGTTT
 
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rJMSF050B14-          TTCCCATTCTTTTGATAACAGATATCTCATGTTTTATTATGCCTGTAATCATGTTGACAA
rJMSF049D12-          TTCCCATTCTTTTGATAACAGATATCTCATGTTTTATTATGCCTGTAATCATGTTGACAA
                      ____________________________________________________________
consensus             TTCCCATTCTTTTGATAACAGATATCTCATGTTTTATTATGCCTGTAATCATGTTGACAA
 
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rJMSF050B14-          CAACGAATAAAGGAGAAGGGTTGATAAGGATACGATACAACTGACAAGAAGTTGGTTTGA
rJMSF049D12-          CAACGAATAAAGGAGAAGGGTTGATAAGGATACGATACAACTGACAAGAAGTTGGTTTGA
                      ____________________________________________________________
consensus             CAACGAATAAAGGAGAAGGGTTGATAAGGATACGATACAACTGACAAGAAGTTGGTTTGA
 
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rJMSF050B14-          AGCGATGAAATAGTTCCTCTGGTATGCAAAACGAACTCTTCAACTTTCATATTCAGTTAT
rJMSF049D12-          AGCGATGAAATAGTTCCTCTGGTATGCAAAACGAACTCTTCAACTTTCATATTCAGTTAT
                      ____________________________________________________________
consensus             AGCGATGAAATAGTTCCTCTGGTATGCAAAACGAACTCTTCAACTTTCATATTCAGTTAT
 
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rJMSF050B14-          TGGTTCTGCCTCGGGGGCCGAAGCCAATCTTGTAAGGACTTCAGGTATTCCAGTAGTATC
rJMSF049D12-          TGGTTCTGCCTCGGGGGCCGAAGCCAATCTTGTAAGGACTTCAGGTATTCCAGTAGTATC
                      ____________________________________________________________
consensus             TGGTTCTGCCTCGGGGGCCGAAGCCAATCTTGTAAGGACTTCAGGTATTCCAGTAGTATC
 
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rJMSF050B14-          TCTAATAATCAGAATCTCATCATCAAGATAGGAGACCATAAATAGTCTTTGAAAGCTCCC
rJMSF049D12-          TCTAATAATCAGAATCTCATCATCAAGATAGGAGACCATAAATAGTCTTTGAAAGCTCCC
                      ____________________________________________________________
consensus             TCTAATAATCAGAATCTCATCATCAAGATAGGAGACCATAAATAGTCTTTGAAAGCTCCC
 
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rJMSF050B14-          ACCAAGAGGAATTTTCAATCCACTGGACACTGCATCTCTAATAGGAACGGGAAGTTGCTG
rJMSF049D12-          ACCAAGAGGAATTTTCAATCCACTGGACACTGCATCTCTAATAGGAACGGGAAGTTGCTG
                      ____________________________________________________________
consensus             ACCAAGAGGAATTTTCAATCCACTGGACACTGCATCTCTAATAGGAACGGGAAGTTGCTG
 
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rJMSF050B14-          AACAGTGTTCACTGCCTGTCCAAAAGCACCTCTTAGTTGCTGAGGTACAGTTTCTTCATT
rJMSF049D12-          AACAGTGTTCACTGCCTGTCCAAAAGCACCTCTTAGTTGCTGAGGTACAGTTTCTTCATT
JMSF049D12+                                           TTAGTTGCTGAGGTACAGTTTCTTCATT
JMSF050B14+                            GTCCAAAAGCACNTNTTAGTTGCTGAGGTACAGTTTCTTCATT
                      ____________________________________________________________
consensus             AACAGTGTTCACTGCCTGTCCAAAAGCACCTCTTAGTTGCTGAGGTACAGTTTCTTCATT
 
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rJMSF050B14-          GACCTTAGGTGATTCAAGTATCCCTTCAACATATTCTTCTTTCATTCTAAGAGGCCCCTC
rJMSF049D12-          GACCTTAGGTGATTCAAGTATCCCTTCAACATATTCTTCTTTCATTCTAAGAGGCCCCTC
JMSF049D12+           GACCTTAGGTGATTCAAGTATCCCTTCAACATATTCTTCTTTCATTNTAAGAGGCCCCTC
JMSF050B14+           GACCTTAGGTGATTCAAGTATCCCTTCAACATATTCTTCTTTCATTNTAAGAGGCCCCTC
                      ____________________________________________________________
consensus             GACCTTAGGTGATTCAAGTATCCCTTCAACATATTCTTCTTTCATTCTAAGAGGCCCCTC
 
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rJMSF050B14-          AACAGATAACTTGGCGGAGAGTATAAAATTGCTCTCAATCGAGTTTAGATATTTCAAGTA
rJMSF049D12-          AACAGATAACTTGGCGGAGAGTATAAAATTGCTCTCAATCGAGTTTAGATATTTCAAGTA
JMSF049D12+           AACAGATAACTTGGCGGAGAGTATAAAATTGCTCTCAATCGAGTTTAGATATTTCAAGTA
JMSF050B14+           AACAGATAACTTGGCGGAGAGTATAAAATTGCTCTCAATCGAGTTTAGATATTTCAAGTA
                      ____________________________________________________________
consensus             AACAGATAACTTGGCGGAGAGTATAAAATTGCTCTCAATCGAGTTTAGATATTTCAAGTA
 
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rJMSF050B14-          AGCAGTGACATTTGCATAGCCATCTTTGATCAACACATCCNACTTTGATAAATTNGCCAA
rJMSF049D12-          AGCAGTGACATTTGCATAGCCATCTTTGATCAACACATCCNACTTTGATAAATTTGCCAA
JMSF049D12+           AGCAGTGACATTTGCATAGCCATCTTTGATCAACACATCCAACTTTGATAAATTTGCCAA
JMSF050B14+           AGCAGTGACATTTGCATAGCCATCTTTGATCAACACATCCAACTTTGATAAATTTGCCAA
                      ____________________________________________________________
consensus             AGCAGTGACATTTGCATAGCCATCTTTGATCAACACATCCAACTTTGATAAATTTGCCAA
 
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rJMSF050B14-          TGATGAAGGA                                                  
rJMSF049D12-          TGATGAAGGAAACCTCTCAAACACAAATTTAGCT                          
JMSF049D12+           TGATGAAGGAAACCTCTCAAACACAAATTTAGCTGCAACGAATCCCAGGCTTCCGGATCC
JMSF050B14+           TGATGAAGGAAACCTCTCAAACACAAATTTAGCTGCAACGAATCCCAGGCTTCCGGATCC
                      ____________________________________________________________
consensus             TGATGAAGGAAACCTCTCAAACACAAATTTAGCTGCAACGAATCCCAGGCTTCCGGATCC
 
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JMSF049D12+           AAACCACTCAAAGTTCCACCGCCCTTCCAAATACGGAGACGTTGTTGGGCGAGGTGTTGG
JMSF050B14+           AAACCACTCAAAGTTCCACCGCCCTTCCAAATACGGAGACGTTGTTGGGCGAGGTGTTGG
                      ____________________________________________________________
consensus             AAACCACTCAAAGTTCCACCGCCCTTCCAAATACGGAGACGTTGTTGGGCGAGGTGTTGG
 
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JMSF049D12+           ATTGAGCCGCTCAAGGCCAATTATCCTCTCATTCACATCAATAAGCTGCATATCCGTAAC
JMSF050B14+           ATTGAGCCGCTCAAGGCCAATTATCCTCTCATTCACATCAATAAGCTGCATATCCGTAAC
                      ____________________________________________________________
consensus             ATTGAGCCGCTCAAGGCCAATTATCCTCTCATTCACATCAATAAGCTGCATATCCGTAAC
 
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JMSF049D12+           TTTCCCTGTTACTAATGCCTCGAATCCTCCAGCATCTTTGAAAGCGAGAAGCAAAGACTC
JMSF050B14+           TTTCCCTGTTACTAATGCCTCGAATCCTCCAGCATCTTTGAAAGCGAGAAGCAAAGACTC
                      ____________________________________________________________
consensus             TTTCCCTGTTACTAATGCCTCGAATCCTCCAGCATCTTTGAAAGCGAGAAGCAAAGACTC
 
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JMSF049D12+           CTTAGCAGAAAGCCTTTCCATTTCTTTAGCGAAAGAAGCAGACGCTCCGCCTTGCACTGT
JMSF050B14+           CTTAGCAGAAAGCCTTTCCATTTCTTTAGCGAAAGAAGCAGACGCTCCGCCTTGCACTGT
                      ____________________________________________________________
consensus             CTTAGCAGAAAGCCTTTCCATTTCTTTAGCGAAAGAAGCAGACGCTCCGCCTTGCACTGT
 
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JMSF049D12+           CTGCTGAACCATGGCTCTGCAAATTCCTGAATTTTTCTTGGCATTTCGGAGATTGTAGTT
JMSF050B14+           CTGCTGAACCATGGCTCTGCAAATTCCTGAATTTTTCTTGGCATTTCGGAGATTGTAGTT
                      ____________________________________________________________
consensus             CTGCTGAACCATGGCTCTGCAAATTCCTGAATTTTTCTTGGCATTTCGGAGATTGTAGTT
 
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JMSF049D12+           TCCCGGGAAAACTCTGGCGGAAACTATGAAGGGAGAAGGAGGTGGAAACGACGACGTATA
JMSF050B14+           TCCCGGGAAAACTCTGGCGGAAACTATGAAGGGAGAAGGAGGTGGAAACGACGACGTATA
                      ____________________________________________________________
consensus             TCCCGGGAAAACTCTGGCGGAAACTATGAAGGGAGAAGGAGGTGGAAACGACGACGTATA
 
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JMSF049D12+           GCGCGAAAATGGCGCGTGCAGGTTCATAACAGAAGAAGCCATT                 
JMSF050B14+           GCGCGAAAATGGCGCGTGCAGGTTCATAACAGAAGAAGCCATTGAAGAATGGAAAATCAC
                      ____________________________________________________________
consensus             GCGCGAAAATGGCGCGTGCAGGTTCATAACAGAAGAAGCCATTGAAGAATGGAAAATCAC