clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF009L06 | Sequence | 370 | 010918 (6) | ref|XP_009603743.1| | 2e-23 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif | 711 | 010918 (6) | ref|XP_008242181.1| | 1e-40 | PREDICTED: mitogen-activated protein kinase kinase 2 [Prunus mume] |
JMSF024M17 | Sequence | 680 | 010918 (6) | emb|CDP03128.1| | 7e-71 | unnamed protein product [Coffea canephora] | 760 | 007238 (4) | ref|XP_009622981.1| | 3e-62 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif |
JMSF047J19 | Sequence | 705 | 010918 (6) | emb|CDP03128.1| | 8e-86 | unnamed protein product [Coffea canephora] | 823 | 007238 (4) | ref|XP_009622981.1| | 2e-104 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif |
JMSF049J23 | Sequence | 670 | 010918 (6) | ref|XP_009603743.1| | 8e-61 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif | 731 | 007238 (4) | ref|XP_009622981.1| | 4e-70 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif |
JMSF050I18 | Sequence | 711 | 010918 (6) | ref|XP_009603743.1| | 8e-121 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif | 722 | 007238 (4) | ref|XP_009622981.1| | 8e-86 | PREDICTED: mitogen-activated protein kinase kinase 2-like [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
rJMSF009L06- ATAGATATATTCCGGTTG
____________________________________________________________
consensus ATAGATATATTCCGGTTG
. : . : . : . : . : . :
rJMSF009L06- GTCCATCATTTAGGTAGTATTTTTTGTTTTAATTTTGTGTTTTTTGCATTGATTTGATTA
____________________________________________________________
consensus GTCCATCATTTAGGTAGTATTTTTTGTTTTAATTTTGTGTTTTTTGCATTGATTTGATTA
. : . : . : . : . : . :
rJMSF009L06- TAGTTTCCAGAAAAGAAGAATGTCTAAGCAGATAGAGTTGTTGCTGGAAGAAACAAGAAA
____________________________________________________________
consensus TAGTTTCCAGAAAAGAAGAATGTCTAAGCAGATAGAGTTGTTGCTGGAAGAAACAAGAAA
. : . : . : . : . : . :
rJMSF009L06- CAGTTGAAGACTTGAAATTAAATGACCATAAATTTGCTTGCTGAGGGGAGCTATGGCAGG
____________________________________________________________
consensus CAGTTGAAGACTTGAAATTAAATGACCATAAATTTGCTTGCTGAGGGGAGCTATGGCAGG
. : . : . : . : . : . :
rJMSF009L06- TAGGTGAGTCGCTGATTGAAGATAGAAATGCAGGTGATCTTGATCGCGGTTAGATCCACA
____________________________________________________________
consensus TAGGTGAGTCGCTGATTGAAGATAGAAATGCAGGTGATCTTGATCGCGGTTAGATCCACA
. : . : . : . : . : . :
rJMSF009L06- CAAGGCCCGAGTAGGAGAAGAGCATTGCGTTATGAGAACATGAAGGGAGATTCGCGCTAA
____________________________________________________________
consensus CAAGGCCCGAGTAGGAGAAGAGCATTGCGTTATGAGAACATGAAGGGAGATTCGCGCTAA
. : . : . : . : . : . :
rJMSF009L06- AGGTTGAATAGAACCGTTCGTTCGTTTTTAACTCAAAATGTTGCAGGTGGAGGCCTTACA
____________________________________________________________
consensus AGGTTGAATAGAACCGTTCGTTCGTTTTTAACTCAAAATGTTGCAGGTGGAGGCCTTACA
. : . : . : . : . : . :
rJMSF009L06- GCAGTAAAGTAAGATGCAAGATCAATATCCAGGTGATCGTACATACTGATGAACGGGTGC
____________________________________________________________
consensus GCAGTAAAGTAAGATGCAAGATCAATATCCAGGTGATCGTACATACTGATGAACGGGTGC
. : . : . : . : . : . :
rJMSF009L06- CTCATTAACTCATTTGCTGACAGTCTCTTTTTCGGGTCCTTCTGCACGCATTTAGAGATG
____________________________________________________________
consensus CTCATTAACTCATTTGCTGACAGTCTCTTTTTCGGGTCCTTCTGCACGCATTTAGAGATG
. : . : . : . : . : . :
rJMSF009L06- AAAGAACAGAACTCTGGAGACATATAATTGTAGGTGCCAACAAAGGTATTGGCCGCTCCA
JMSF050I18+ CAAAGGTATTGGCCGCTCCA
____________________________________________________________
consensus AAAGAACAGAACTCTGGAGACATATAATTGTAGGTGCCAACAAAGGTATTGGCCGCTCCA
. : . : . : . : . : . :
rJMSF009L06- GATGTGCTTGTTAGTACAACACTAACACCGAAATCGGTTATCTTGACATCACCTCTATGG
JMSF050I18+ GATGTGCTTGTTAGTACAACACTAACACCGAAATCGGTTATCTTGACATCACCTCTATGG
____________________________________________________________
consensus GATGTGCTTGTTAGTACAACACTAACACCGAAATCGGTTATCTTGACATCACCTCTATGG
. : . : . : . : . : . :
rJMSF009L06- TTTATCAGCAAATTTGAAGGCTTCAAGTCTCTGTGAATGATATGTTTTTCATGGTGGAGA
JMSF024M17+ AATGATATGTTTTTCATGATGGAGA
JMSF050I18+ TTTATCAGCAAATTTGAAGGCTTCAAGTCTCTGTGAATGATATGTTTTTCATGGTGGAGA
____________________________________________________________
consensus TTTATCAGCAAATTTGAAGGCTTCAAGTCTCTGTGAATGATATGTTTTTCATGGTGGAGA
. : . : . : . : . : . :
rJMSF009L06- TACCACAAGCCCTTGAGTACCTGCTTGCAGATA
JMSF024M17+ TACCACAAGCCCTTGAGTACCTGCTTGCAGATAGCAGCAAGATATGGTTCCGGAATTCTT
JMSF050I18+ TACCACAAGCCCTTGAGTACCTGCTTGCAGATAGCTGCAAGATATGGTTCCGGAATTCTT
____________________________________________________________
consensus TACCACAAGCCCTTGAGTACCTGCTTGCAGATAGCTGCAAGATATGGTTCCGGAATTCTT
. : . : . : . : . : . :
JMSF024M17+ TTGACTATTTTCAAGAAATCCTGAAGAGACCCGCCATCCATGTACTCCAAGATTATGGAG
JMSF050I18+ TTGACTATTTTCAAGAAATCCTGAAGAGATCCGCCATCCATGTACTCCAAGATTAAGGAG
JMSF049J23+ AGATTAAGGAG
____________________________________________________________
consensus TTGACTATTTTCAAGAAATCCTGAAGAGATCCGCCATCCATGTACTCCAAGATTAAGGAG
. : . : . : . : . : . :
JMSF024M17+ ATGGCACCGTTATCAAAAAACGCTTCGTAACATATTACAACATAAGGGCATTGCGATGAT
JMSF050I18+ ATGGCACCATTATCAAAAAACGCTTCGTAACATATTACCACATAAGGGCACTGCGATGAT
JMSF049J23+ ATGGCACCATTATCAAAAAACGCTTCGTAACATATTACCACATAAGGGCACTGCGATGAT
____________________________________________________________
consensus ATGGCACCATTATCAAAAAACGCTTCGTAACATATTACCACATAAGGGCACTGCGATGAT
. : . : . : . : . : . :
JMSF024M17+ TGGTTAATTCTCAGTTCCTGTGCTATATGCCTGCGAATAGACTCTTCAATATTCATTTGA
JMSF050I18+ TGGTTAATTCTCAGTTCCTGTGCTATATGCCTGCGAATAGACTCTTCAATATTCATTTGA
JMSF049J23+ TGGTTAATTCTCAGTTCCTGTGCTATATGCCTGCGAATAGACTCTTCAATATTCATTTGA
____________________________________________________________
consensus TGGTTAATTCTCAGTTCCTGTGCTATATGCCTGCGAATAGACTCTTCAATATTCATTTGA
. : . : . : . : . : . :
JMSF024M17+ ATAACCTTGAGAGCGAAAAATTGGGCTGTCCACTTATGTTGAACAAGCCGCACAACACCG
JMSF050I18+ ATAACCTTGAGAGCGAAAAATTGCGCTGTCCACTTATGTTGAACAAGCCGCACAACACCG
JMSF047J19+ ACCTTGAGAGCGAAAAATTGCGCTGTCCACTTATGTTGAACAAGCCGCACAACACCG
JMSF049J23+ ATAACCTTGAGAGCGAAAAATTGCGCTGTCCACTTATGTTGAACAAGCCGCACAACACCG
____________________________________________________________
consensus ATAACCTTGAGAGCGAAAAATTGCGCTGTCCACTTATGTTGAACAAGCCGCACAACACCG
. : . : . : . : . : . :
JMSF024M17+ CCATTTCCCTTTCCAATAACTTTAACATTATTCAAAGTCTGCTAGGCTTAACTGATTATC
JMSF050I18+ CCATTTCCCTTTCCAATAACTTTAACA-TATTCAAAGTCTGCTAAGCTTAACTGGTTATC
JMSF009L06+ TCCAATAACTTTAACA-TATTCAAAGTCTGCTAAGCTTAACTGGTTATC
JMSF047J19+ CCATTTCCCTTTCCAATAACTTTAACA-TATTCAAAGTCTGCTAAGCTTAACTGGTTATC
JMSF049J23+ CCATTTCCCTTTCCAATAACTTTAACA-TATTCAAAGTCTGCTAAGCTTAACTGGTTATC
____________________________________________________________
consensus CCATTTCCCTTTCCAATAACTTTAACA-TATTCAAAGTCTGCTAAGCTTAACTGGTTATC
. : . : . : . : . : . :
JMSF024M17+ GGTTGGCTTTATAACTGTAGAAGTTTCAACATGTTTATCTGAAATAATCCGAATTCCATC
JMSF050I18+ AGTTGGCTTTATAACCGTAGAAGTTTCAACATGATTATCTGAAATAATCCGAATTCCATC
JMSF009L06+ AGTTGGCTTTATAACCGTAGAAGTTTCAACATGATTATCTGAAATAATCCGAATTCCATC
JMSF047J19+ AGTTGGCTTTATAACCGTAGAAGTTTCAACATGATTATCTGAAATAATCCGAATTCCATC
JMSF049J23+ AGTTGGCTTTATAACCGTAGAAGTTTCAACATGATTATCTGAAATAATCCGAATTCCATC
____________________________________________________________
consensus AGTTGGCTTTATAACCGTAGAAGTTTCAACATGATTATCTGAAATAATCCGAATTCCATC
. : . : . : . : . : . :
JMSF024M17+ TTTGTTCACCAGCAGATCTCCATCCTTGAATGTTCCTGATTGTGTCAGGAATTTGGATAG
JMSF050I18+ TTTGTTCACCAGCAGATCTCCATCCTTAAATGTTCCTGATTGTGTCAGGAATTTGGAGAG
JMSF009L06+ TTTGTTCACCAGCAGATCTCCATCCTTAAATGTTCCTGATTGTGTCAGGAATTTGGAGAG
JMSF047J19+ TTTGTTCACCAGCAGATCTCCATCCTTAAATGTTCCTGATTGTGTCAGGAATTTGGAGAG
JMSF049J23+ TTTGTTCACCAGCAGATCTCCATCCTTAAATGTTCCTGATTGTGTCAGGAATTTGGAGAG
____________________________________________________________
consensus TTTGTTCACCAGCAGATCTCCATCCTTAAATGTTCCTGATTGTGTCAGGAATTTGGAGAG
. : . : . : . : . : . :
JMSF024M17+ AGCAACTTCATCAGGAGGAGGGAGAGAGAGTTTGAGCTTAGGGGCCAAAGCTCCTTTATT
JMSF050I18+ AGCAACTTCATCAGGAGGAGGGAGAGAGAGTTTGAGCTTAGGGGCCAAAGCTCCTTTATT
JMSF009L06+ AGCAACTTCATCAGGAGGAGGGAGAGAGAGTTTGAGCTTAGGGGCCAAAGCTCCTTTATT
JMSF047J19+ AGCAACTTCATCAGGAGGAGGGAGAGAGAGTTTGAGCTTAGGGGCCAAAGCTCCTTTATT
JMSF049J23+ AGCAACTTCATCAGGAGGAGGGAGAGAGAGTTTGAGCTTAGGGGCCAAAGCTCCTTTATT
____________________________________________________________
consensus AGCAACTTCATCAGGAGGAGGGAGAGAGAGTTTGAGCTTAGGGGCCAAAGCTCCTTTATT
. : . : . : . : . : . :
JMSF024M17+ CATTGCAATTCTCTCTTGCAAAGC
JMSF050I18+ CATTGCAATTCTCTCTAGCAAAGCAAAGCTT
JMSF009L06+ CATTGCAATTCTCTCTAGCAAAGCAAAGCTTAGAAGTATTTTCCAATTCTACTTCTTTAT
JMSF047J19+ CATTGCAATTCTCTCTAGCAAAGCAAAGCTTAGAAGTATTTTCCAATTCTACTTCTTTAT
JMSF049J23+ CATTGCAATTCTCTCTAGCAAAGCAAAGCTTAGAAGTATTTTCCAATTCTACTTCTTTAT
____________________________________________________________
consensus CATTGCAATTCTCTCTAGCAAAGCAAAGCTTAGAAGTATTTTCCAATTCTACTTCTTTAT
. : . : . : . : . : . :
JMSF009L06+ CTGGGCTTTTTGATGAAAAATTGCACAAGTGATGTGAGAGCTCCTCTCTCCCTCTGCGTC
JMSF047J19+ CTGGGCTTTTTGATGAAAAATTGCACAAGTGATGTGAGAGCTCCTCTCTCCCTCTGCGTC
JMSF049J23+ CTGGGCTTTTTGATGAAAAATTGCACAAGTGATGTGAGAGCTCCTCTCTCCCTCTGCGTC
____________________________________________________________
consensus CTGGGCTTTTTGATGAAAAATTGCACAAGTGATGTGAGAGCTCCTCTCTCCCTCTGCGTC
. : . : . : . : . : . :
JMSF009L06+ TCTTTGTGTGGGTCTTCCAC
JMSF047J19+ TCTTTGTGTGGGTCTTCCACGGAACAGAAAGAGTGGCAC
JMSF049J23+ TCTTTGTGTGGGTCTTCCACGGAACAGAAAGAGTGGCACACTCTGTATGAGTTGAATGGT
____________________________________________________________
consensus TCTTTGTGTGGGTCTTCCACGGAACAGAAAGAGTGGCACACTCTGTATGAGTTGAATGGT
. : . : . : . : . : . :
JMSF049J23+ GAGAACCTAAGAGAGAGAAAACAGGACGAAGATGCTTTCTTTGACTTTTCTCCATTCTCC
____________________________________________________________
consensus GAGAACCTAAGAGAGAGAAAACAGGACGAAGATGCTTTCTTTGACTTTTCTCCATTCTCC