Contig 010916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF046F08Sequence378010916 (2)687021579ref|XP_009609912.1|1e-40PREDICTED: CASP-like protein 5B3, partial [Nicotiana tomentosiformis]
JMSF049I15Sequence392010916 (2)790015182ref|XP_009609912.1|5e-34PREDICTED: CASP-like protein 5B3, partial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF046F08+                                       TTTTTTTTTTATCTTTCCTGTACAGAGAAAAC
JMSF049I15+                                       TTTTTTTTTTATCTTTCCTGTACAGAGAAAAC
                      ____________________________________________________________
consensus                                         TTTTTTTTTTATCTTTCCTGTACAGAGAAAAC
 
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JMSF046F08+           CTTCACTCCCTCGATGGGCTACCGGAGAACTCCATCTTCCTAAGGGAAATGTCTCACTCA
JMSF049I15+           CTTCACTCCCTCGATGGGCTACCGGAGAACTCCATCTTCCTAAGGGAAATGTCTCACTCA
                      ____________________________________________________________
consensus             CTTCACTCCCTCGATGGGCTACCGGAGAACTCCATCTTCCTAAGGGAAATGTCTCACTCA
 
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JMSF046F08+           ATCAACGAGAAATCGAAAAAGACTGGAACTTTATCAATCCTACCAAGAAATAAAAAGGAA
JMSF049I15+           ATCAACGAGAAATCGAAAAAGACTGGAACTTTATCAATCCTACCAAGAAATAAAAAGGAA
                      ____________________________________________________________
consensus             ATCAACGAGAAATCGAAAAAGACTGGAACTTTATCAATCCTACCAAGAAATAAAAAGGAA
 
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JMSF046F08+           ATTGGGGAAAATTATTGATAATAAAAAGAGAAAAGCAGGATCACGGAAGCACAAAGCACA
JMSF049I15+           ATTGGGGAAAATTATTGATAATAAAAAGAGAAAAGCAGGATCACGGAAGCACAAAGCACA
                      ____________________________________________________________
consensus             ATTGGGGAAAATTATTGATAATAAAAAGAGAAAAGCAGGATCACGGAAGCACAAAGCACA
 
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JMSF046F08+           AAGATTTTATTTTTCTTTAATATGTGGGGAGATGGAAACAGGAAACTCAAGATTGAGTAG
JMSF049I15+           AAGATTTTATTTTTCTTTAATATGTGGGGAGATGGAAACAGGAAACTCAAGATTGAGTAG
                      ____________________________________________________________
consensus             AAGATTTTATTTTTCTTTAATATGTGGGGAGATGGAAACAGGAAACTCAAGATTGAGTAG
 
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JMSF046F08+           TTTATACTTTATAGAAGAACAAGAACAAGACAAAAGACNCCGGGCACGCTGTTCTGAGAC
JMSF049I15+           TTTATACTTTATAGAAGAACAAGAACAAGACAAAAGACACCGGGCACGCTGTTCTGAGAC
                      ____________________________________________________________
consensus             TTTATACTTTATAGAAGAACAAGAACAAGACAAAAGACACCGGGCACGCTGTTCTGAGAC
 
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JMSF046F08+           GGAAATGGAGCAGCCCGCCACGCTCTTTCTTGAGGAGATGTCTAC               
JMSF049I15+           GGAAATGGAGCAGCCCGCCACGCTCTTTCTTGAGGAGATGTCTACAAGAAGAAAAAGGCC
                      ____________________________________________________________
consensus             GGAAATGGAGCAGCCCGCCACGCTCTTTCTTGAGGAGATGTCTACAAGAAGAAAAAGGCC