Contig 010912:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049D15Sequence663010912 (2)ref|XP_007039818.1|1e-20Uncharacterized protein isoform 2, partial [Theobroma cacao] ref|XP_007039819.1|622010912 (2)ref|XP_007039818.1|9e-21Uncharacterized protein isoform 2, partial [Theobroma cacao] ref|XP_007039819.1|

Alignment

This contig is upended


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rJMSF049D15+                                                                   GGT
JMSF049D15-                                                                    GGT
                      ____________________________________________________________
consensus                                                                      GGT
 
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rJMSF049D15+          AAAACCCTAAACCCTAGTCCAAAAGCCTCGCCACGAATCTCCACTGTCAGCTCGACAAGC
JMSF049D15-           AAAACCCTAAACCCTAGTCCAAAAGCCTCGCCACGAATCTCCACTGTCAGCTCGACAAGC
                      ____________________________________________________________
consensus             AAAACCCTAAACCCTAGTCCAAAAGCCTCGCCACGAATCTCCACTGTCAGCTCGACAAGC
 
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rJMSF049D15+          CGTAAATCTTCCCGTCTTTGCGGCTCTGCTTCAGCTTCAGCTTCAGCTTCTACTATTCCT
JMSF049D15-           CGTAAATCTTCCCGTCTTTGCGGCTCTGCTTCAGCTTCAGCTTCAGCTTCTACTATTCCT
                      ____________________________________________________________
consensus             CGTAAATCTTCCCGTCTTTGCGGCTCTGCTTCAGCTTCAGCTTCAGCTTCTACTATTCCT
 
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rJMSF049D15+          TCGAAGATGGCTTCCAGATGCAGCAGAATCATCAATCGAGCTTCCATTTCCTCTATCAGA
JMSF049D15-           TCGAAGATGGCTTCCAGATGCAGCAGAATCATCAATCGAGCTTCCATTTCCTCTATCAGA
                      ____________________________________________________________
consensus             TCGAAGATGGCTTCCAGATGCAGCAGAATCATCAATCGAGCTTCCATTTCCTCTATCAGA
 
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rJMSF049D15+          TCTGCAATTAAGCCCAAATTAGAATCCACTACGTCGTCGTTTCCCAAATCCTCTCTCCCG
JMSF049D15-           TCTGCAATTAAGCCCAAATTAGAATCCACTACGTCGTCGTTTCCCAAATCCTCTCTCCCG
                      ____________________________________________________________
consensus             TCTGCAATTAAGCCCAAATTAGAATCCACTACGTCGTCGTTTCCCAAATCCTCTCTCCCG
 
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rJMSF049D15+          TCCAGATCAACTTCTTCTCCTCTTCGTCAATTCTCCTTCTCCAGGTGTCCGTCGGAGTTG
JMSF049D15-           TCCAGATCAACTTCTTCTCCTCTTCGTCAATTCTCCTTCTCCAGGTGTCCGTCGGAGTTG
                      ____________________________________________________________
consensus             TCCAGATCAACTTCTTCTCCTCTTCGTCAATTCTCCTTCTCCAGGTGTCCGTCGGAGTTG
 
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rJMSF049D15+          GGATGCGCGGCATCAATGTTGCCGCTGCACAGCGCCGTAGCTACGGCGAGGATGACGTCG
JMSF049D15-           GGATGCGCGGCATCAATGTTGCCGCTGCACAGCGCCGTAGCTACGGCGAGGATGACGTCG
                      ____________________________________________________________
consensus             GGATGCGCGGCATCAATGTTGCCGCTGCACAGCGCCGTAGCTACGGCGAGGATGACGTCG
 
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rJMSF049D15+          TGCTTGAGCTCAACATCTAGGAACTGTAGAGCTCTTACACAGGGTACTCTCTGCTGCACC
JMSF049D15-           TGCTTGAGCTCAACATCTAGGAACTGTAGAGCTCTTACACAGGGTACTCTCTGCTGCACC
                      ____________________________________________________________
consensus             TGCTTGAGCTCAACATCTAGGAACTGTAGAGCTCTTACACAGGGTACTCTCTGCTGCACC
 
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rJMSF049D15+          TCTCCAGGCCTCTAGCATGTTCTTTTATTAGTCCCAAATAACAAAAAAAAATGAAATTGA
JMSF049D15-           TCTCCAGGCCTCTAGCATGTTCTTTTATTAGTCCCAAATAACAAAAAAAAATGAAATTGA
                      ____________________________________________________________
consensus             TCTCCAGGCCTCTAGCATGTTCTTTTATTAGTCCCAAATAACAAAAAAAAATGAAATTGA
 
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rJMSF049D15+          TGGAACGTGAACTCGTTTTTGCTGTTTCTGGTGGATCATCTGCTTGAATGTATCTTAACC
JMSF049D15-           TGGAACGTGAACTCGTTTTTGCTGTTTCTGGTGGATCATCTGCTTGAATGTATCTTAACC
                      ____________________________________________________________
consensus             TGGAACGTGAACTCGTTTTTGCTGTTTCTGGTGGATCATCTGCTTGAATGTATCTTAACC
 
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rJMSF049D15+          TCAAGGAATTATAAGAGTAGTTTTCCACCATTCTTGGAAGAGATTTTTTTGTACAAGAAA
JMSF049D15-           TCAAGGAATTATAAGAGTAGTTTTCCACCATTCTTGGAAGAGATTTTTTTGTACAAGAAA
                      ____________________________________________________________
consensus             TCAAGGAATTATAAGAGTAGTTTTCCACCATTCTTGGAAGAGATTTTTTTGTACAAGAAA
 
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rJMSF049D15+          TCATATTTGTAAAAA                                             
JMSF049D15-           TCATATTTGTTAAAAATTTCTATAAAGATTGATTCATGTTTTTAGTACCCAAAAAAAAAA
                      ____________________________________________________________
consensus             TCATATTTGTTAAAAATTTCTATAAAGATTGATTCATGTTTTTAGTACCCAAAAAAAAAA