Contig 010910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011A13Sequence238009049 (9)640010910 (2)
JMSF048P11Sequence690010910 (2)ref|XP_004252067.1|2e-61PREDICTED: U-box domain-containing protein 34 [Solanum lycopersicum]748023645ref|XP_009604176.1|4e-66PREDICTED: U-box domain-containing protein 34-like isoform X2 [Nicotiana toment

Alignment

This contig is upended


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rJMSF011A13+                                                             TCCTAGACC
                      ____________________________________________________________
consensus                                                                TCCTAGACC
 
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rJMSF011A13+          NTTCTCCNTTCNCTATATTCCATNTGAAAAAGCATCAAAAGTTACAAAAATTTTAAAAAT
                      ____________________________________________________________
consensus             NTTCTCCNTTCNCTATATTCCATNTGAAAAAGCATCAAAAGTTACAAAAATTTTAAAAAT
 
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rJMSF011A13+          TCTCGGTAATGATTTTTGTTCAAGAAGACNATCCAGTTCCCTTTCAAATGAGTTCGCCNT
                      ____________________________________________________________
consensus             TCTCGGTAATGATTTTTGTTCAAGAAGACNATCCAGTTCCCTTTCAAATGAGTTCGCCNT
 
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rJMSF011A13+          TGCCAAAGTTTACTTAGCNTGGNGTATTTACCNTAATTTCATCTTTTTTTTTTTATAGCT
                      ____________________________________________________________
consensus             TGCCAAAGTTTACTTAGCNTGGNGTATTTACCNTAATTTCATCTTTTTTTTTTTATAGCT
 
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rJMSF011A13+          GTGCTACAAAAAAGAGAAACTGCAAATATTGGTTGACTTGTATGATTTGTGACACTGAGC
                      ____________________________________________________________
consensus             GTGCTACAAAAAAGAGAAACTGCAAATATTGGTTGACTTGTATGATTTGTGACACTGAGC
 
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rJMSF011A13+          TGACTTAATCTTTCATGTCCATTAAGTTCTCAAACTGGTTCACTTTAGAGTGAAGCACTT
                      ____________________________________________________________
consensus             TGACTTAATCTTTCATGTCCATTAAGTTCTCAAACTGGTTCACTTTAGAGTGAAGCACTT
 
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rJMSF011A13+          GCTAAGTTTAATATTGACTCCGTAGAAAACAAGAGATATTGCAAAATGTTAGTTGACTTG
                      ____________________________________________________________
consensus             GCTAAGTTTAATATTGACTCCGTAGAAAACAAGAGATATTGCAAAATGTTAGTTGACTTG
 
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rJMSF011A13+          TATGATCCATGAATCCTAGCTGACTTAATCTATCATGTCCATTAAGTTCTCAAAAAGGTT
                      ____________________________________________________________
consensus             TATGATCCATGAATCCTAGCTGACTTAATCTATCATGTCCATTAAGTTCTCAAAAAGGTT
 
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rJMSF011A13+          CATTTTAGANTGAATGCTTGCTCAATCAAATATTTAGCCTTGTGAGTCATGACTTNTGAT
                      ____________________________________________________________
consensus             CATTTTAGANTGAATGCTTGCTCAATCAAATATTTAGCCTTGTGAGTCATGACTTNTGAT
 
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rJMSF011A13+          TTGTATTCCTATGAGACATNTTGCAGCAGGAGAGAGAGTTTCTGCTGAGGAGCTGGAGAC
JMSF048P11-                                     CAGGAGAGAGAGTTTCTGTTGAGGAGCTGGAGAC
                      ____________________________________________________________
consensus             TTGTATTCCTATGAGACATNTTGCAGCAGGAGAGAGAGTTTCTGTTGAGGAGCTGGAGAC
 
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rJMSF011A13+          CAGTGNGGTGGACATGGNATGTGCAGGATAGGAAGGCTAAACGTGAAGAGATATTTATTC
JMSF048P11-           CAGTGTGGTGGA-ATGGTATGTGCAGGATAGGAAGGCTAAATGTGAAGAGATATTTATTC
                      ____________________________________________________________
consensus             CAGTGTGGTGGACATGGTATGTGCAGGATAGGAAGGCTAAATGTGAAGAGATATTTATTC
 
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rJMSF011A13+          CATTTAAGACTACTATCCAAAAGGAAAAAA                              
JMSF048P11-           CATTTAAGA-TACTATCCAAAAGGAAAAAAATGGAAACTTTGGTACTTGAAGGAGACAGT
                      ____________________________________________________________
consensus             CATTTAAGACTACTATCCAAAAGGAAAAAAATGGAAACTTTGGTACTTGAAGGAGACAGT
 
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JMSF048P11-           CCTACAACAGTACTTCTGAGATATGTAACTGACTCTGCGGTTAGTAGTTTAGTGATGGGC
                      ____________________________________________________________
consensus             CCTACAACAGTACTTCTGAGATATGTAACTGACTCTGCGGTTAGTAGTTTAGTGATGGGC
 
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JMSF048P11-           TCATCCTCTCCTTGCTACTTTTCTAGGAAGGCAAAAGGCTTGGATGTGCCATCAGCTGTT
                      ____________________________________________________________
consensus             TCATCCTCTCCTTGCTACTTTTCTAGGAAGGCAAAAGGCTTGGATGTGCCATCAGCTGTT
 
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JMSF048P11-           CTCAAATATGCCCCTGATTCCTGTGATGTCTTTGTGGTATCTACTAATAGGCTTATGGCG
                      ____________________________________________________________
consensus             CTCAAATATGCCCCTGATTCCTGTGATGTCTTTGTGGTATCTACTAATAGGCTTATGGCG
 
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JMSF048P11-           AAGTCTTTGAATCCTTTGTTAACTTCTGCGCACAGCAGGTCATCATCCATTGCTGAATTT
                      ____________________________________________________________
consensus             AAGTCTTTGAATCCTTTGTTAACTTCTGCGCACAGCAGGTCATCATCCATTGCTGAATTT
 
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JMSF048P11-           AGTGACCCAGATGCTGCAGCACTTGACCAAGGGGATTCTTCTATATATTTTCATGCTTCT
                      ____________________________________________________________
consensus             AGTGACCCAGATGCTGCAGCACTTGACCAAGGGGATTCTTCTATATATTTTCATGCTTCT