Contig 010909:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS045C11Sequence588010909 (3)gb|AGW21715.1|3e-109tobamovirus multiplication protein 1 [Nicotiana benthamiana]
JMSF030F18Sequence665010909 (3)gb|AGW21715.1|3e-69tobamovirus multiplication protein 1 [Nicotiana benthamiana]722024606ref|XP_010647565.1|172PREDICTED: tobamovirus multiplication protein 1 [Vitis vinifera]
JMSF048L11Sequence660010909 (3)gb|AGW21715.1|7e-101tobamovirus multiplication protein 1 [Nicotiana benthamiana]728005915 (6)ref|XP_009776464.1|2e-51PREDICTED: tobamovirus multiplication protein 1-like, partial [Nicotiana sylves

Alignment

This contig is upended


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JMSF030F18+                                                              AAACTCAAT
                      ____________________________________________________________
consensus                                                                AAACTCAAT
 
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JMSF030F18+           GGCACTATTGTCATTAATCCAAAGGTACACCCATATACCACCCTGTATGATGTATATTCC
                      ____________________________________________________________
consensus             GGCACTATTGTCATTAATCCAAAGGTACACCCATATACCACCCTGTATGATGTATATTCC
 
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JMSF030F18+           AGCATTGATTGAAATATAAAACAATCTGAGCTTATCAGTTGGCAAACTTCTAGCCTGCCC
                      ____________________________________________________________
consensus             AGCATTGATTGAAATATAAAACAATCTGAGCTTATCAGTTGGCAAACTTCTAGCCTGCCC
 
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JMSF030F18+           ATTCGTAAGGGTGAAGAGTTAGCATGACTGACCTATACTAAAAACAATGAAAGTGTATTT
                      ____________________________________________________________
consensus             ATTCGTAAGGGTGAAGAGTTAGCATGACTGACCTATACTAAAAACAATGAAAGTGTATTT
 
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JMFS045C11+                                           GCCTGGCGATATATTTCTGCCCAGAATA
JMSF030F18+           GCAAGAGACTCCATAGATCAATGACTTCACTTGCCTGGCGATATATTTCTGCCCAGAATA
JMSF048L11+                                           GCCTGGCGATATATTTCTGCCCAGAATA
                      ____________________________________________________________
consensus             GCAAGAGACTCCATAGATCAATGACTTCACTTGCCTGGCGATATATTTCTGCCCAGAATA
 
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JMFS045C11+           GGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTACCAAAG
JMSF030F18+           GGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTACCAAAG
JMSF048L11+           GGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTACCAAAG
                      ____________________________________________________________
consensus             GGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTACCAAAG
 
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JMFS045C11+           TAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGCACGAA
JMSF030F18+           TAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGCACGAA
JMSF048L11+           TAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGCACGAA
                      ____________________________________________________________
consensus             TAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGCACGAA
 
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JMFS045C11+           CTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAACTCTG
JMSF030F18+           CTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAACTCTG
JMSF048L11+           CTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAACTCTG
                      ____________________________________________________________
consensus             CTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAACTCTG
 
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JMFS045C11+           GCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGCAAAGG
JMSF030F18+           GCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGCAAAGG
JMSF048L11+           GCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGCAAAGG
                      ____________________________________________________________
consensus             GCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGCAAAGG
 
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JMFS045C11+           CACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTCGTCCC
JMSF030F18+           CACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTCGTCCC
JMSF048L11+           CACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTCGTCCC
                      ____________________________________________________________
consensus             CACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTCGTCCC
 
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JMFS045C11+           ACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTNNGACCA
JMSF030F18+           ACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCTGACCA
JMSF048L11+           ACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCTGACCA
                      ____________________________________________________________
consensus             ACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCTGACCA
 
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JMFS045C11+           TCGCACT                                                     
JMSF030F18+           TCGCACTTTGACCTTCTCCCCAACTCTCTATCAGTCTATCTTACCTGCGCT         
JMSF048L11+           TCGCACTTTGACCTTCTCCCCAACTCTCTATCAGTCTATCTTACCTGCGCTTGTCAAATC
                      ____________________________________________________________
consensus             TCGCACTTTGACCTTCTCCCCAACTCTCTATCAGTCTATCTTACCTGCGCTTGTCAAATC