Contig 010908:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G13Sequence531010908 (5)gb|KJB36915.1|2e-81hypothetical protein B456_006G182500 [Gossypium raimondii]599008121 (4)ref|XP_010423956.1|1e-39PREDICTED: LIMR family protein At5g01460-like [Camelina sativa]
JMFF002F15Sequence592010908 (5)gb|KJB36913.1|2e-84hypothetical protein B456_006G182500 [Gossypium raimondii] gb|KJB36917.1| hypoth748008121 (4)gb|KDO56636.1|1e-48hypothetical protein CISIN_1g021594mg [Citrus sinensis]
JMFS095B03Sequence615010908 (5)gb|KJB36915.1|4e-72hypothetical protein B456_006G182500 [Gossypium raimondii]
JMSF045O05Sequence787010908 (5)gb|KHN05546.1|2e-93LIMR family protein [Glycine soja]641008121 (4)gb|KDO56636.1|1e-58hypothetical protein CISIN_1g021594mg [Citrus sinensis]
JMSF048I15Sequence674010908 (5)gb|KJB36913.1|3e-80hypothetical protein B456_006G182500 [Gossypium raimondii] gb|KJB36917.1| hypoth727008121 (4)gb|KDO56636.1|2e-57hypothetical protein CISIN_1g021594mg [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045O05+ TCAGATGAAGGACTTGC
                      ____________________________________________________________
consensus TCAGATGAAGGACTTGC
 
. : . : . : . : . : . :
JMFF002F15+ TCGCTACTAGAGAATGA
JMSF045O05+ AGAATATGCAGAGCACTGATGAGGACCATTTCCAATACATGGCTCGCTACTAGAGAATGA
                      ____________________________________________________________
consensus AGAATATGCAGAGCACTGATGAGGACCATTTCCAATACATGGCTCGCTACTAGAGAATGA
 
. : . : . : . : . : . :
JMFF002F15+ AAATGTGTTCGTGAAGGCAGTAGTACCAGAGGAAAGGTGTCTCACGGTGAAGTCTACCTT
JMFF001G13+ GGTGAAGTCTACCTT
JMSF045O05+ AAATGTGTTCGTGAAGGCAGTAGTACCAGAGGAAAGGTGTCTCACGGTGAAGTCTACCTT
JMSF048I15+ GGTGAAGTCTACCTT
                      ____________________________________________________________
consensus AAATGTGTTCGTGAAGGCAGTAGTACCAGAGGAAAGGTGTCTCACGGTGAAGTCTACCTT
 
. : . : . : . : . : . :
JMFF002F15+ CCCAACAAGCCCATATAAAATTCCAAGCAAGAGAGCACACACAATTGCCGTGACCGCTAC
JMFF001G13+ CCCAACAAGCCCATATAAAATTCCAAGCAAGAGAGCACACACAATTGCCGTGACCGCTAC
JMSF045O05+ CCCAACAAGCCCATATAAAATTCCAAGCAAGAGAGCACACACAATTGCCGTGACCGCTAC
JMFS095B03+ TTCCAAGCAAGAGAGCACACACAATTGCCGTGACCGCTAC
JMSF048I15+ CCCAACAAGCCCATATAAAATTCCAAGCAAGAGAGCACACACAATTGCCGTGACCGCTAC
                      ____________________________________________________________
consensus CCCAACAAGCCCATATAAAATTCCAAGCAAGAGAGCACACACAATTGCCGTGACCGCTAC
 
. : . : . : . : . : . :
JMFF002F15+ CCAACATAAAGAGCTCTTAATCCTCTTGCCAAGGCTCTTGTCCTGGTCGCCTTCATAGAA
JMFF001G13+ CCAACATAAAGAGCTCTTAATCCTCTTGCCAAGGCTCTTGTCCTGGTCGCCTTCATAGAA
JMSF045O05+ CCAACATAAAGAGCTCTTAATCCTCTTGCCAAGGCTCTTGTCCTGGTCGCCTTCATAGAA
JMFS095B03+ CCAACATAAAGAGCTCTTAATCCTCTGNCCAAGGCTCTTGTCCTGGTCGCCTTCATAGAA
JMSF048I15+ CCAACATAAAGAGCTCTTAATCCTCTTGCCAAGGGTCTTGTCCTGGTCGCCTTCATAGAA
                      ____________________________________________________________
consensus CCAACATAAAGAGCTCTTAATCCTCTTGCCAAGGCTCTTGTCCTGGTCGCCTTCATAGAA
 
. : . : . : . : . : . :
JMFF002F15+ GAACATAGCGAATGGAATAATGAAGAAAACGAGCACAGCGTTAACAATGTAGATGGCGAG
JMFF001G13+ GAACATAGCGAATGGAATAATGAAGAAAACGAGCACAGCGTTAACAATGTAGATGGCGAG
JMSF045O05+ GAACATAGCGAATGGAATAATGAAGAAAACGAGCACAGCGTTAACAATGTAGATGGCGAG
JMFS095B03+ GAACATAGCGAATGGAATAATGAAGAAAACGAGCACAGCGTTAACAATGTAGATGGCGAG
JMSF048I15+ GAACATAGCGAACGGAATAATGAAGAAAACGAGCACAGCGTTAACAATGTAGATGGCGAG
                      ____________________________________________________________
consensus GAACATAGCGAATGGAATAATGAAGAAAACGAGCACAGCGTTAACAATGTAGATGGCGAG
 
. : . : . : . : . : . :
JMFF002F15+ CCAGAGTTCCTTCATCGGAAGCGTGAGATTGCAGGCGCCGTTGTAAATCGAGTGGCGGCA
JMFF001G13+ CCAGAGTTCCTTCATCGGAAGCGTGAGATTGCAGGCGCCGTTGTAAATCGAGTGGCGGCA
JMSF045O05+ CCAGAGTTCCTTCATCGGAAGCGTGAGATTGCAGGCGCCGTTGTAAATCGAGTGGCGGCA
JMFS095B03+ CCAGAGTTCCTTCATCGGAAGCGTGAGATTGCAGGCGCCGTTGTAAATCGAGTGGCGGCA
JMSF048I15+ CCAGAGTTCCTTCATCGGAAGCGTGAGATTGCAGGCGCCGTTGTAAATCGAGTGGCGGCA
                      ____________________________________________________________
consensus CCAGAGTTCCTTCATCGGAAGCGTGAGATTGCAGGCGCCGTTGTAAATCGAGTGGCGGCA
 
. : . : . : . : . : . :
JMFF002F15+ GGCCTGCCGATTTGCCACATCCGCCGGCAGCATGAGGATGGAGATGGCGGCGACGGAGAG
JMFF001G13+ GGCCTGCCGATTTGCCACATCCGCCGGCAGCATGAGGATGGAGATGGCGGCGACGGAGAG
JMSF045O05+ GGCCTGCCGATTTGCCACATCCGCCGGCAGCATGAGGATGGAGATGGCGGCGACGGAGAG
JMFS095B03+ GGCCTGCCGATTTGCCACATCCGCCGGCAGCATGAGGATGGAGATGGCGGCGACGGAGAG
JMSF048I15+ GGCCTGCCGATTTGCCACATCCGCCGGCAGCATGAGGATGGAGATGGCGGCGACGGAGAG
                      ____________________________________________________________
consensus GGCCTGCCGATTTGCCACATCCGCCGGCAGCATGAGGATGGAGATGGCGGCGACGGAGAG
 
. : . : . : . : . : . :
JMFF002F15+ GCCGAAAACGACGACGAATTTAGGAAAATAGGCCTGGTTGGCATCGTCTGGGTGCTGGTA
JMFF001G13+ GCCGAAAACGACGACGAATTTAGGAAAATAGGCCTGGTTGGCATCGTCTGGGTGCTGGTA
JMSF045O05+ GCCGAAAACGACGACGAATTTAGGAAAATAGGCCTGGTTGGCATCGTCTGGGTGCTGGTA
JMFS095B03+ GCCGAAAACGACGACGAATTTAGGAAAATAGGCCTGGTTGGCATCGTCTGGGTGCTGGTA
JMSF048I15+ GCCGAAAACGACGACGAATTTAGGAAAATAGGCCTGGTTGGCATCGTCTGGGTGCTGGTA
                      ____________________________________________________________
consensus GCCGAAAACGACGACGAATTTAGGAAAATAGGCCTGGTTGGCATCGTCTGGGTGCTGGTA
 
. : . : . : . : . : . :
JMFF002F15+ GTTTACGAGGAGATAGATGTTGATGAGGAAGACGATAACGCACACCACTATGGCGACGAT
JMFF001G13+ GTTTACGAGGAGATAGATGTTGATGAGGAAGACGATAACGCACACCACTATGGCGACGAT
JMSF045O05+ GTTTACGAGGAGATAGATGTTGATGAGGAAGACGATAACGCACACCACTATGGCGACGAT
JMFS095B03+ GTTTACGAGGAGATAGATGTTGATGAGGAAGACGATAACGCACACCACTATGGCGACGAT
JMSF048I15+ GTTTACGAGGAGATAGATGTTGATGAGGAAGACGATAACGCACACCACTATGGCGACGAT
                      ____________________________________________________________
consensus GTTTACGAGGAGATAGATGTTGATGAGGAAGACGATAACGCACACCACTATGGCGACGAT
 
. : . : . : . : . : . :
JMFF002F15+ CAACAGCGCGAGATTGAAATCCCCCATTTTCTCCGGCTACGAAGAAATGTGATTTCTCCC
JMFF001G13+ CAACAGCGCGAGATTGAAATCCCCCATTTTCTCCGGCTACGAAGAAATGTGATTTCTCCC
JMSF045O05+ CAACAGCGCGAGATTGAAATCCCCCATTTTCTCCGGCTACGAAGAAATGTGATTTCTCCC
JMFS095B03+ CAACAGCGCGAGATTGAAATCCCCCATTTTCTCCGGCTACGAAGAAATGTGATTTCTCCC
JMSF048I15+ CAACAGCGCGAGATTGAAATCCCCCATTTTCTCCGGCTACGAAGAAATGTGATTTCTCCC
                      ____________________________________________________________
consensus CAACAGCGCGAGATTGAAATCCCCCATTTTCTCCGGCTACGAAGAAATGTGATTTCTCCC
 
. : . : . : . : . : . :
JMFF002F15+ TCGATTCGAACCAGTTCCAGATTTGACTTGATCC
JMFF001G13+ TCGATTCGAACCAGTTCCAGATTTGACTTGATCC
JMSF045O05+ TCGATTCGAACCAGTTCCAGATTTGACTTGATCCGAGTCGGGTAGAAATTAGTGTAACGA
JMFS095B03+ TCGATTCGAACCAGTTCCAGATTTGACTTGATCCGAGTCGGGTAGAAATTAGTGTAACGA
JMSF048I15+ TCGATTCGAACCAGTTCCAGATTTGACTTGATCCGAGTCGGGTAGAAATTAGTGTAACGA
                      ____________________________________________________________
consensus TCGATTCGAACCAGTTCCAGATTTGACTTGATCCGAGTCGGGTAGAAATTAGTGTAACGA
 
. : . : . : . : . : . :
JMSF045O05+ GTTTATAGGTTGTTGGTCGTGGACAAAAAAAAACGGGTCTGGATTTAAAACGGGTCCTCT
JMFS095B03+ GTTTATAGGTTGTTGGTCGTGGAC-AAAAAAAACGGGTCTGGATTTAAAACGGGTCCTCT
JMSF048I15+ GTTTATAGGTTGTTGGTCGTGGAC-AAAAAAAACGGGTCTGGATTTAAAACGGGTCCTCT
                      ____________________________________________________________
consensus GTTTATAGGTTGTTGGTCGTGGAC-AAAAAAAACGGGTCTGGATTTAAAACGGGTCCTCT
 
. : . : . : . : . : . :
JMSF045O05+ GCTGCTAATCTGGGTAGGGAAATCTGCAATGGAGGAGAGCCGGTT
JMFS095B03+ GCTGCTAATCTGGGTAGGGAAATCTGCAATGGAGGA
JMSF048I15+ GCTGCTAATCTGGGTAGGGAAATCTGCAATGGAGGAGAGCCGGTTTGATGCGTTCAGTCC
                      ____________________________________________________________
consensus GCTGCTAATCTGGGTAGGGAAATCTGCAATGGAGGAGAGCCGGTTTGATGCGTTCAGTCC