Contig 010906:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012B13Sequence468010906 (4)gb|KDP29765.1|7e-75hypothetical protein JCGZ_18700 [Jatropha curcas]651010906 (4)emb|CDP01564.1|1e-85unnamed protein product [Coffea canephora]
JMSF048C10Sequence719010906 (4)emb|CDP01564.1|2e-85unnamed protein product [Coffea canephora]754010906 (4)emb|CDP01564.1|3e-85unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF048C10-                  ATAAGGTCTATTGGGCTTGAAAATAACAAACATCGCAAAGTGGTCTTGAAAC
                      ____________________________________________________________
consensus                     ATAAGGTCTATTGGGCTTGAAAATAACAAACATCGCAAAGTGGTCTTGAAAC
 
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rJMSF048C10-          CACAACTTTCAATTTTCATATTACAGACTGCATTTTGTGTTTTTATTCATCACTAAACTA
rJMFF012B13-                            TATTACAGACTGCATTTTGTGTTTTTATTCATCACTAAACTA
JMSF048C10+            ACAACTTTCAATTTTCATATTACAGACTGCATTTTGTGTTTTTATTCATCACTAAACTA
                      ____________________________________________________________
consensus             CACAACTTTCAATTTTCATATTACAGACTGCATTTTGTGTTTTTATTCATCACTAAACTA
 
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rJMSF048C10-          TCATTAATCCAATAATAATGATACAATGATTATGTATCGGCTTGCAATTCTCAGTTCTAC
rJMFF012B13-          TCATTAATCCAATAATAATGATACAATGATTATGTATCGGCTTGCAATTCTCAGTTCTAC
JMSF048C10+           TCATTAATCCAATAATAATGATACAATGATTATGTATCGGCTTGCAATTCTCAGTTCTAC
                      ____________________________________________________________
consensus             TCATTAATCCAATAATAATGATACAATGATTATGTATCGGCTTGCAATTCTCAGTTCTAC
 
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rJMSF048C10-          TTGCTGTAGATCCTTGCTTAAGAACTCGACTTTTGTGAGAAGTCAGAAAGCCCACGCCTC
rJMFF012B13-          TTGCTGTAGATCCTTGCTTAAGAACTCGACTTTTGTGAGAAGTCAGAAAGCCCACGCCTC
JMSF048C10+           TTGCTGTAGATCCTTGCTTAAGAACTCGACTTTTGTGAGAAGTCAGAAAGCCCACGCCTC
                      ____________________________________________________________
consensus             TTGCTGTAGATCCTTGCTTAAGAACTCGACTTTTGTGAGAAGTCAGAAAGCCCACGCCTC
 
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rJMSF048C10-          AAAGCTTCGAGGGTAACCCCATTATGTACTAAGATGCTTGTTGCACCCATTTTTGAGACC
rJMFF012B13-          AAAGCTTCGAGGGTAACCCCATTATGTACTAAGATGCTTGTTGCACCCATTTTTGAGACC
JMFF012B13+                                   TGTACTAAGATGCTTGTTGCACCCATTTTTGAGACC
JMSF048C10+           AAAGCTTCGAGGGTAACCCCATTATGTACTAAGATGCTTGTTGCACCCATTTTTGAGACC
                      ____________________________________________________________
consensus             AAAGCTTCGAGGGTAACCCCATTATGTACTAAGATGCTTGTTGCACCCATTTTTGAGACC
 
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rJMSF048C10-          GCTTGAATGTTCCTGTCTTCATCATCGAAGAAGAGCATCGAGTCAAATGGTATCCCGGTT
rJMFF012B13-          GCTTGAATGTTCCTGTCTTCATCATCGAAGAAGAGCATCGAGTCAAATGGTATCCCGGTT
JMFF012B13+           GCTTGAATGTTCCTGTCTTCATCATCGAAGAAGAGCATCGAGTCAAATGGTATCCCGGTT
JMSF048C10+           GCTTGAATGTTCCTGTCTTCATCATCGAAGAAGAGCATCGAGTCAAATGGTATCCCGGTT
                      ____________________________________________________________
consensus             GCTTGAATGTTCCTGTCTTCATCATCGAAGAAGAGCATCGAGTCAAATGGTATCCCGGTT
 
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rJMSF048C10-          TTCCTGTGAATTTTCTGAAAGTGCTCCGTTTTGTGAGACCAGCTAGAATAAATTTCCTCA
rJMFF012B13-          TTCCTGTGAATTTTCTGAAAGTGCTCCGTTTTGTGAGACCAGCTAGAATAAATTTCCTCA
JMFF012B13+           TTCCTGTGAATTTTCTGAAAGTGCTCCGTTTTGTGAGACCAGCTAGAATAAATTTCCTCA
JMSF048C10+           TTCCTGTGAATTTTCTGAAAGTGCTCCGTTTTGTGAGACCAGCTAGAATAAATTTCCTCA
                      ____________________________________________________________
consensus             TTCCTGTGAATTTTCTGAAAGTGCTCCGTTTTGTGAGACCAGCTAGAATAAATTTCCTCA
 
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rJMSF048C10-          GCCACAAACATTGATCTTATTTTCAGTTTATCAAGAAAGGCTTTAGCAACATTAGCAGTT
rJMFF012B13-          GCCACAAACATTGATCTTATTTTCAGTTTATCAAGAAAGGCTTTAGCAACATTAGCAGTT
JMFF012B13+           GCCACAAACATTGATCTTATTTTCAGTTTATCAAGAAAGGCTTTAGCAACATTAGCAGTT
JMSF048C10+           GCCACAAACATTGATCTTATTTTCAGTTTATCAAGAAAGGCTTTAGCAACATTAGCAGTT
                      ____________________________________________________________
consensus             GCCACAAACATTGATCTTATTTTCAGTTTATCAAGAAAGGCTTTAGCAACATTAGCAGTT
 
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rJMSF048C10-          GGGGATCTAGAAGCAATGGCTATATCAATTCCCCGGTCCTTGAGAGCATACAGTATTCCT
rJMFF012B13-          GGGGATCTAGAAGCAATGGCTATATCAATTCCCCGGTCCTTGAGAGCATACAGTATTCCT
JMFF012B13+           GGGGATCTAGAAGCAATGGCTATATCAATTCCCCGGTCCTTGAGAGCATACAGTATTCCT
JMSF048C10+           GGGGATCTAGAAGCAATGGCTATATCAATTCCCCGGTCCTTGAGAGCATACAGTATTCCT
                      ____________________________________________________________
consensus             GGGGATCTAGAAGCAATGGCTATATCAATTCCCCGGTCCTTGAGAGCATACAGTATTCCT
 
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rJMSF048C10-          TTAGAATGTGGGTATAAATGTGGCTCATCATCCTCTTCGTAGAACTCACAGTAAAAAGGC
rJMFF012B13-          TTAGAATGTGGGTATAAATGTGGCTCATCATCCTCTTCGTAGAACTCACAGTAAAAAGGC
JMFF012B13+           TTAGAATGTGGGTATAAATGTGGCTCATCATCCTCTTCGTAGAACTCACAGTAAAAAGGC
JMSF048C10+           TTAGAATGTGGGTATAAATGTGGCTCATCATCCTCTTCGTAGAACTCACAGTAAAAAGGC
                      ____________________________________________________________
consensus             TTAGAATGTGGGTATAAATGTGGCTCATCATCCTCTTCGTAGAACTCACAGTAAAAAGGC
 
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rJMSF048C10-          CAGAGTGTGTAATCGAGATCGAAGACAACGAGACGAGGAAGGCAGTGGTTGTACTGTTCG
rJMFF012B13-          CAGAGTGTGTAATCGAGATCGAAGACAACGAGACGAGGAAGGCAGTGGTTGTACTGTTCG
JMFF012B13+           CAGAGTGTGTAATCGAGATCGAAGACAACGAGACGAGGAAGGCAGTGGTTGTACTGTTCG
JMSF048C10+           CAGAGTGTGTAATCGAGATCGAAGACAACGAGACGAGGAAGGCAGTGGTTGTACTGTTCG
                      ____________________________________________________________
consensus             CAGAGTGTGTAATCGAGATCGAAGACAACGAGACGAGGAAGGCAGTGGTTGTACTGTTCG
 
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rJMSF048C10-          ATGATACGATCGGCTTCCTCCTTCACCTTCTTCTCGTCCGCCATCGCTCCCCTTCGATGG
rJMFF012B13-          ATGATACGATCGGCTTCCTCCTTCACCTTCTTCTCGTCCGCCATCGCTCCCCTTCGATGG
JMFF012B13+           ATGATACGATCGGCTTCCTCCTTCACCTTCTTCTCGTCCGCCATCGCTCCCCTTCGATGG
JMSF048C10+           ATGATACGATCGGCTTCCTCCTTCACCTTCTTCTCGTCCGCCATCGCTCCCCTTCGATGG
                      ____________________________________________________________
consensus             ATGATACGATCGGCTTCCTCCTTCACCTTCTTCTCGTCCGCCATCGCTCCCCTTCGATGG
 
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rJMSF048C10-          TCCAGTCCAATTATCAAAGCCGCGTATACTTTTCACTAATTT                  
rJMFF012B13-          TCCAG                                                       
JMFF012B13+           TCCAG                                                       
JMSF048C10+           TCCAGTCCAATTATCAAAGCCGCGTATACTTTTCACTAATTTCAGATTTTTAGACATGTC
                      ____________________________________________________________
consensus             TCCAGTCCAATTATCAAAGCCGCGTATACTTTTCACTAATTTCAGATTTTTAGACATGTC