Contig 010901: Sequence
BLAST Hits against nr-aa DB Show
| clone | 5'-sequence | 3'-sequence |
|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description |
|---|
| JMSF047G14 | Sequence | 473 | 010901 (2) | gb|KJB33596.1| | 6e-25 | hypothetical protein B456_006G090500 [Gossypium raimondii] gb|KJB33597.1| hypoth | 426 | 010901 (2) | gb|KJB33596.1| | 3e-25 | hypothetical protein B456_006G090500 [Gossypium raimondii] gb|KJB33597.1| hypoth |
Alignment
This contig is upended
. : . : . : . : . : . :
rJMSF047G14+ GCGCAGTACACTAAGGAGCTCACTCTTAAAGAAGCTGAAACAATAGCACTATC
JMSF047G14- GAAGCTGAAACAATAGCACTATC
____________________________________________________________
consensus GCGCAGTACACTAAGGAGCTCACTCTTAAAGAAGCTGAAACAATAGCACTATC
. : . : . : . : . : . :
rJMSF047G14+ CATCCTCAAGCAAGTTATGGAGGAAAAGGTGACTCCCAATAATGTCGATATTGCCAGGGT
JMSF047G14- CATCCTCAAGCAAGTTATGGAGGAAAAGGTGACTCCCAATAATGTCGATATTGCCAGGGT
____________________________________________________________
consensus CATCCTCAAGCAAGTTATGGAGGAAAAGGTGACTCCCAATAATGTCGATATTGCCAGGGT
. : . : . : . : . : . :
rJMSF047G14+ ATCCCCAACTTATCATTTGTACCCCCCTTCCGAGGTGGAGGCTGTCATTAGCCGCCTGTA
JMSF047G14- ATCCCCAACTTATCATTTGTACCCCCCTTCCGAGGTGGAGGCTGTCATTAGCCGCCTGTA
____________________________________________________________
consensus ATCCCCAACTTATCATTTGTACCCCCCTTCCGAGGTGGAGGCTGTCATTAGCCGCCTGTA
. : . : . : . : . : . :
rJMSF047G14+ AGGAGAGAACTACATCCAGGAGCTTTGCACTTAATCCGGTTTTGTGTAATTGCAAACATT
JMSF047G14- AGGAGAGAACTACATCCAGGAGCTTTGCACTTAATCCGGTTTTGTGTAATTGCAAACATT
____________________________________________________________
consensus AGGAGAGAACTACATCCAGGAGCTTTGCACTTAATCCGGTTTTGTGTAATTGCAAACATT
. : . : . : . : . : . :
rJMSF047G14+ TGCATCTGTACTAGAATTGGATTTTTCCAAAAGTTTGTTTCGAGATTGTGCTCCATTAGT
JMSF047G14- TGCATCTGTACTAGAATTGGATTTTTCCAAAAGTTTGTTTCGAGATTGTGCTCCATTAGT
____________________________________________________________
consensus TGCATCTGTACTAGAATTGGATTTTTCCAAAAGTTTGTTTCGAGATTGTGCTCCATTAGT
. : . : . : . : . : . :
rJMSF047G14+ AGTTGAATGAAACTTCGGGGTGAACTTCTTTTAAGGTTGAGTTGATCCTTTTGACTTCAT
JMSF047G14- AGTTGAATGAAACTTCGGGGTGAACTTCTTTTAAGGTTGAGTTGATCCTTTTGACTTCAT
____________________________________________________________
consensus AGTTGAATGAAACTTCGGGGTGAACTTCTTTTAAGGTTGAGTTGATCCTTTTGACTTCAT
. : . : . : . : . : . :
rJMSF047G14+ TATGTCTCACTTCCCAGTGGTTTATTTTGGGGATGTTTGGTAAATAGCTATTAGCTGGGT
JMSF047G14- TATGTCTCACTTCCCAGTGGTTTATTTTGGGGATGTTTGGTAAATAGCTATTAGCTGGGT
____________________________________________________________
consensus TATGTCTCACTTCCCAGTGGTTTATTTTGGGGATGTTTGGTAAATAGCTATTAGCTGGGT
. : . : . : . : . : . :
rJMSF047G14+ TTGAGTAGT
JMSF047G14- TTGAGTAGTTGATTGTAGAAAGATGTTTGGTAAATTAGCTGTTAACTGATAAAAAAAAAA
____________________________________________________________
consensus TTGAGTAGTTGATTGTAGAAAGATGTTTGGTAAATTAGCTGTTAACTGATAAAAAAAAAA