Contig 010896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022K21Sequence671010896 (7)ref|XP_004232623.1|9e-75PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu731007254 (7)ref|XP_004232623.1|8e-40PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu
JMSF028L23Sequence679010896 (7)ref|XP_010316519.1|4e-84PREDICTED: uncharacterized protein LOC101252349 isoform X1 [Solanum lycopersicu724007254 (7)ref|XP_009617275.1|5e-58PREDICTED: uncharacterized protein LOC104109628 isoform X2 [Nicotiana tomentosi
JMSF038G15Sequence682010896 (7)ref|XP_004232623.1|6e-84PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu889007254 (7)ref|XP_002275523.2|1e-74PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth
JMSF042P04Sequence698010896 (7)ref|XP_004232623.1|4e-88PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu701007254 (7)ref|XP_009617275.1|1e-52PREDICTED: uncharacterized protein LOC104109628 isoform X2 [Nicotiana tomentosi
JMSF047B23Sequence641010896 (7)ref|XP_010316519.1|1e-50PREDICTED: uncharacterized protein LOC101252349 isoform X1 [Solanum lycopersicu769007254 (7)ref|XP_009617275.1|6e-48PREDICTED: uncharacterized protein LOC104109628 isoform X2 [Nicotiana tomentosi
JMSF049K03Sequence624010896 (7)ref|XP_004232623.1|2e-55PREDICTED: uncharacterized protein LOC101252349 isoform X2 [Solanum lycopersicu783007254 (7)ref|XP_002275523.2|3e-83PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth
JMSF052B12Sequence718010896 (7)ref|XP_010316519.1|2e-81PREDICTED: uncharacterized protein LOC101252349 isoform X1 [Solanum lycopersicu843007254 (7)ref|XP_002275523.2|1e-71PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth

Alignment

This contig is upended


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JMSF042P04+                                                         TCCAAAAGGTCCTC
                      ____________________________________________________________
consensus                                                           TCCAAAAGGTCCTC
 
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JMSF028L23+                     AGAAGCAAGCTAGTGCATTTTTCAGCACTTGGCAAGAAGTCACCATAGAG
JMSF042P04+           CTCTTTAGCTAGAAGCAAGCTAGTGCATTCTTCAGCACTTGGCAAGAAGTCACCATAGAG
JMSF038G15+                     AGAAGCAAGCTAGTGCATTCTTCAGCACTTGGCAAGAAGTCACCATAGAG
JMSF022K21+                                                          AGTCACCATAGAG
JMSF052B12+                     AGAAGCAAGCTAGTGCATTCTTCAGCACTTGGCAAGAAGTCACCATAGAG
                      ____________________________________________________________
consensus             CTCTTTAGCTAGAAGCAAGCTAGTGCATTCTTCAGCACTTGGCAAGAAGTCACCATAGAG
 
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JMSF028L23+           TTGCCAAAAGTTGTCCTTGCAATCAAAGGAATACAAAAGAAGGCATGCCAACCTTAGGTC
JMSF042P04+           TTGCCAAAAGTTGTCCTTGCAATCAAAGGAATACAAAAGAAGGCATGCCAACCTTAGGTC
JMSF038G15+           TTGCCAAAAGTTGTCCTTGCAATCAAAGGAATACAAAAGAAGGCATGCCAACCTTAGGTC
JMSF022K21+           TTGCCAAAAGTTGTCCTTGCAATCAAAGGAATACAAAAGAAGGCATGCCAACCTTAGGTC
JMSF052B12+           NTGCCAAAAGTTGTCCTTGCAATCAAAGGAATACAAAAGAAGGCATGCCAACCTTAGGTC
                      ____________________________________________________________
consensus             TTGCCAAAAGTTGTCCTTGCAATCAAAGGAATACAAAAGAAGGCATGCCAACCTTAGGTC
 
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JMSF028L23+           CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
JMSF042P04+           CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
JMSF038G15+           CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
JMSF022K21+           CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
JMSF052B12+           CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
JMSF049K03+           CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
JMSF047B23+                              GTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
                      ____________________________________________________________
consensus             CCAATCTGTCTCTGGATTGGTGGAATTAATAATGTCAAATATAGGATGACCCACGGGTAT
 
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JMSF028L23+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
JMSF042P04+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
JMSF038G15+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
JMSF022K21+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
JMSF052B12+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
JMSF049K03+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
JMSF047B23+           AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
                      ____________________________________________________________
consensus             AATGTCAGGGAAAAACATCCAAGGAAGCTTTTGACTTATTGTTAACATCAACTCTAATGG
 
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JMSF028L23+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
JMSF042P04+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
JMSF038G15+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
JMSF022K21+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
JMSF052B12+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
JMSF049K03+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
JMSF047B23+           GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
                      ____________________________________________________________
consensus             GATTTCCATGATGATCCTGGAACGACGAAGAGGCTCAACATCTTTGGAAGCATATACTCC
 
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JMSF028L23+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
JMSF042P04+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
JMSF038G15+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
JMSF022K21+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
JMSF052B12+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
JMSF049K03+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
JMSF047B23+           ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
                      ____________________________________________________________
consensus             ATACCCATCGGGTCCTTCCCTGAATTCCACTCCATATGCTCGGAAACTTCTCACAAACCC
 
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JMSF028L23+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
JMSF042P04+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
JMSF038G15+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
JMSF022K21+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
JMSF052B12+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
JMSF049K03+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
JMSF047B23+           TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
                      ____________________________________________________________
consensus             TATCTTGTAGAAATCAGGGTCTGCCAGCTCCAACTGAGAAGCAGGAGTTTCTTCAGGCTG
 
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JMSF028L23+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
JMSF042P04+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
JMSF038G15+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
JMSF022K21+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
JMSF052B12+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
JMSF049K03+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
JMSF047B23+           AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
                      ____________________________________________________________
consensus             AGAAGGCGGGTGAAAGAGAGGGAACGAAGAAGGAGATGAAGAAGAATTAGGGATGTCAAG
 
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JMSF028L23+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
JMSF042P04+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
JMSF038G15+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
JMSF022K21+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
JMSF052B12+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
JMSF049K03+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
JMSF047B23+           AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
                      ____________________________________________________________
consensus             AGTAGCTGTACTAGTAGAAGCAGCAGCGCCATTAGCACTAGCAGCACCAATTTCAGCTCT
 
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JMSF028L23+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
JMSF042P04+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
JMSF038G15+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
JMSF022K21+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
JMSF052B12+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
JMSF049K03+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
JMSF047B23+           GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
                      ____________________________________________________________
consensus             GATAATTGGTCTGCGTCTTGTTACAACAATGGCCTGGGCGGGGAGCCGCCACCTCTGGCA
 
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JMSF028L23+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
JMSF042P04+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
JMSF038G15+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
JMSF022K21+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
JMSF052B12+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
JMSF049K03+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
JMSF047B23+           GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
                      ____________________________________________________________
consensus             GTGGTGATTTGCGGAGACCAGAAAATGGGAGGAGGGTTGATGAATCAGAGTAGAAGTCAC
 
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JMSF028L23+           CATTACTTTTCCAGTTGAAATTC                                     
JMSF042P04+           CATTACTTTTCCAGTTGAAATTC                                     
JMSF038G15+           CATTACTTTTCCAGTTGAAATTCGAATCC                               
JMSF022K21+           CATTACTTTTCCAGTTGAAATTCGAATCCTCCGAAACGTTATCCACTAGACCACCGC   
JMSF052B12+           CATTACTTTTCCAGTTGAAATTCGAATCCTCCGAAACGTTATCCACTAGACCACCGCTAC
JMSF049K03+           CATTACTTTTCCAGTTGAAATTCGAATCCTCCGAAACGTTATCCACTAGACCACCGCTAC
JMSF047B23+           CATTACTTTTCCAGTTGAAATTCGAATCCTCCGAAACGTTATCCACTAGACCACCGCTAC
                      ____________________________________________________________
consensus             CATTACTTTTCCAGTTGAAATTCGAATCCTCCGAAACGTTATCCACTAGACCACCGCTAC
 
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JMSF052B12+           TATCAGC                                                     
JMSF049K03+           TATCAGCGATTCAGTGAATCGTC                                     
JMSF047B23+           TATCAGCGATTCAGTGAATCGTCATCTCTCAGAAAATGAACCAAGGGGTTTTTTGCTGTC
                      ____________________________________________________________
consensus             TATCAGCGATTCAGTGAATCGTCATCTCTCAGAAAATGAACCAAGGGGTTTTTTGCTGTC