Contig 010883:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028K03Sequence652010883 (3)ref|NP_001275389.1|6e-41ubiquitin-conjugating enzyme E2 27-like [Solanum tuberosum] gb|ABB86282.1| ubiqu743008557 (3)ref|XP_009615553.1|1e-65PREDICTED: ubiquitin-conjugating enzyme E2 27 [Nicotiana tomentosiformis] ref|XP
JMSF045H20Sequence760010883 (3)ref|NP_001275389.1|2e-40ubiquitin-conjugating enzyme E2 27-like [Solanum tuberosum] gb|ABB86282.1| ubiqu716020515ref|XP_009615553.1|6e-10PREDICTED: ubiquitin-conjugating enzyme E2 27 [Nicotiana tomentosiformis] ref|XP
JMSF052P13Sequence656010883 (3)ref|NP_001275389.1|6e-41ubiquitin-conjugating enzyme E2 27-like [Solanum tuberosum] gb|ABB86282.1| ubiqu909008557 (3)ref|XP_009615553.1|8e-65PREDICTED: ubiquitin-conjugating enzyme E2 27 [Nicotiana tomentosiformis] ref|XP

Alignment

This contig is upended


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JMSF052P13+                                 TTGAATGTTTCATTAAATTCCATGAGCATCACTAATAA
JMSF045H20+                               ATTTGAATGTTTCATTAAATTCCATGAGCATCACTAATAA
                      ____________________________________________________________
consensus                                 ATTTGAATGTTTCATTAAATTCCATGAGCATCACTAATAA
 
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JMSF052P13+           ATAAAGATGCCTCATTAAATTGTCATGAAGGCTAGCTAAAGCTATCACAAAGTCATCATC
JMSF028K03+                                    TGAAGGCTAGCTAAAGCTATCACAAAGTCATCATC
JMSF045H20+           ATAAAGATGCCTCATTAAATTGTCATGAAGGCTAGCTAAAGCTATCACAAAGTCATCATC
                      ____________________________________________________________
consensus             ATAAAGATGCCTCATTAAATTGTCATGAAGGCTAGCTAAAGCTATCACAAAGTCATCATC
 
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JMSF052P13+           TTGGCAACATTAGATGCCAAATATAACTCAGCTCAGGAAAAGGAATAGAGAGTTGAATTT
JMSF028K03+           TTGGCAACATTAGATGCCAAATATAACTCAGCTCAGGAAAAGGAATAGAGAGTTGAATTT
JMSF045H20+           TTGGCAACATTAGATGCCAAATATAACTCAGCTCAGGAAAAGGAATAGAGAGTTGAATTT
                      ____________________________________________________________
consensus             TTGGCAACATTAGATGCCAAATATAACTCAGCTCAGGAAAAGGAATAGAGAGTTGAATTT
 
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JMSF052P13+           TTAGCTCATCTCTAAGATCAAATTGAACGTTTTTCCTAAGTTCAAGATTCAGAGATCACG
JMSF028K03+           TTAGCTCATCTCTAAGATCAAATTGAACGTTTTTCCTAAGTTCAAGATTCAGAGATCACG
JMSF045H20+           TTAGCTCATCTCTAAGATCAAATTGAACGTTTTTCCTAAGTTCAAGATTCAGAGATCACG
                      ____________________________________________________________
consensus             TTAGCTCATCTCTAAGATCAAATTGAACGTTTTTCCTAAGTTCAAGATTCAGAGATCACG
 
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JMSF052P13+           AGTATCCAACATAATTTGATATGATGTGATTTTGCAACAAAATAGTAAGGTGCAAATTAA
JMSF028K03+           AGTATCCAACATAATTTGATATGATGTGATTTTGCAACAAAATAGGAAGGTGCAAATTAA
JMSF045H20+           AGTATCCAACATAATTTGATATGATGTGATTTTGCAACAAAATAGGAAGGTGCAAATTAA
                      ____________________________________________________________
consensus             AGTATCCAACATAATTTGATATGATGTGATTTTGCAACAAAATAGGAAGGTGCAAATTAA
 
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JMSF052P13+           ATGACAATAAAGCAAAAGAAATTTCATCATACCAAACTTTTGTGGCAAATTTCATTTTTG
JMSF028K03+           ATGACAATAAAGCAAAAGAAATTTCATCATACCAAACTTTTGTGGCAAATTTCATTTTTG
JMSF045H20+           ATGACAATAAAGCAAAAGAAATTTCATCATACCAAACTTTTGTGGCAAATTTCATTTTTG
                      ____________________________________________________________
consensus             ATGACAATAAAGCAAAAGAAATTTCATCATACCAAACTTTTGTGGCAAATTTCATTTTTG
 
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JMSF052P13+           GTGGCTCAAATGGGTATCCATCAGGGAGAGTTATGTCGATCTTGAAAGTGCCGCCTTCGT
JMSF028K03+           GTGGCTCAAATGGGTATCCATCAGGGAGAGTTATGTCGATCTTGAAAGTGCCGCCTTCGT
JMSF045H20+           GTGGCTCAAATGGGTATCCATCAGGGAGAGTTATGTCGATCTTGAAAGTGCCGCCTTCGT
                      ____________________________________________________________
consensus             GTGGCTCAAATGGGTATCCATCAGGGAGAGTTATGTCGATCTTGAAAGTGCCGCCTTCGT
 
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JMSF052P13+           AGGGTGTACCGATAGGGCCAGGGATGGTGCCGCTCAAATGGGTCAAACTGTCGCCTCTCG
JMSF028K03+           AGGGTGTACCGATAGGGCCAGGGATGGTGCCGCTCAAATGGGTCAAACTGTCGCCTCTCG
JMSF045H20+           AGGGTGTACCGATAGGGCCAGGGATGGTGCCGCTCAAATGGGTCAAACTGTCGCCTCTCG
                      ____________________________________________________________
consensus             AGGGTGTACCGATAGGGCCAGGGATGGTGCCGCTCAAATGGGTCAAACTGTCGCCTCTCG
 
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JMSF052P13+           GGCTGACCTTTATTCCCGAAACCTGCACGTCTCTGTTGCACTCTTGCAGCTCCTTCTGCA
JMSF028K03+           GGCTGACCTTTATTCCCGAAACCTGCACGTCTCTGTTGCACTCTTGCAGCTCCTTCTGCA
JMSF045H20+           GGCTGACCTTTATTCCCGAAACCTGCACGTCTCTGTTGCACTCTTGCAGCTCCTTCTGCA
                      ____________________________________________________________
consensus             GGCTGACCTTTATTCCCGAAACCTGCACGTCTCTGTTGCACTCTTGCAGCTCCTTCTGCA
 
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JMSF052P13+           CCCGACCCAAGTCCACCATTTTTCCGTCCTTCCTTCTGGTTTCTCCTCAATTCGATTCTA
JMSF028K03+           CCCGACCCAAGTCCACCATTTTTCCGTCCTTCCTTCTGGTTTCTCCTCAATTCGATTCTA
JMSF045H20+           CCCGACCCAAGTCCACCATTTTTCCGTCCTTCCTTCTGGTTTCTCCTCAATTCGATTCTA
                      ____________________________________________________________
consensus             CCCGACCCAAGTCCACCATTTTTCCGTCCTTCCTTCTGGTTTCTCCTCAATTCGATTCTA
 
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JMSF052P13+           CTATACCCTAACCCTCCGCACAGGAGTACTGCTCCGCCTCTCTCGCGCTCTCTCGAGTGT
JMSF028K03+           CTATACCCTAACCCTCCGCACAGGAGTACTGCTCCGCCTCTCTCGCGCTCTCTCGAGTGT
JMSF045H20+           CTATACCCTAACCCTCCGCACAGGAGTACTGCTCCGCCTCTCTCGCGCTCTCTCGAGTGT
                      ____________________________________________________________
consensus             CTATACCCTAACCCTCCGCACAGGAGTACTGCTCCGCCTCTCTCGCGCTCTCTCGAGTGT
 
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JMSF052P13+           CCCTATCGCCCTCCGCT                                           
JMSF028K03+           CCCTATCGCCCTCCGCTGGGTTTGCCTTTACCTTTGGAAAGAGAGATAGAGAGAATCGTG
JMSF045H20+           CCCTATCGCCCTCCGCTGGGTTTGCCTTTACCTTTGGAAAGAGAGATAGAGAGAATCGTG
                      ____________________________________________________________
consensus             CCCTATCGCCCTCCGCTGGGTTTGCCTTTACCTTTGGAAAGAGAGATAGAGAGAATCGTG
 
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JMSF028K03+           AGCTGCACCGCACC                                              
JMSF045H20+           AGCTGCACCGCACCGCAGAGAATTAAAAAAACAAAACAAAATGAATTAAAGGACTTTCTC
                      ____________________________________________________________
consensus             AGCTGCACCGCACCGCAGAGAATTAAAAAAACAAAACAAAATGAATTAAAGGACTTTCTC