Contig 010873:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044D11Sequence724010873 (2)gb|ACD03214.1|2e-123xyloglucan endotransglucosylase/hydrolase 4 [Actinidia deliciosa]754010873 (2)ref|XP_009787021.1|6e-98PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Nicotiana sylve

Alignment

This contig is upended


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rJMSF044D11-                          AAACAAATGCATATTTTAATGGACACGTAGACGTAGAAAAGTGC
                      ____________________________________________________________
consensus                             AAACAAATGCATATTTTAATGGACACGTAGACGTAGAAAAGTGC
 
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rJMSF044D11-          ATATTTTACACAGGCTACAATATAATCGAGAGTTGATACAAAATTACGTCGTAACACACG
                      ____________________________________________________________
consensus             ATATTTTACACAGGCTACAATATAATCGAGAGTTGATACAAAATTACGTCGTAACACACG
 
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rJMSF044D11-          CTTTAATTTTATGCTTCTTTAATTTATACATGTGTAATTCATCACACCCCGCCCCTGGCC
                      ____________________________________________________________
consensus             CTTTAATTTTATGCTTCTTTAATTTATACATGTGTAATTCATCACACCCCGCCCCTGGCC
 
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rJMSF044D11-          CCTGCCCGGAGGTCCATATTTCAGAATTGATCTGATCGTGATAACGTAACTAGTGGCGGT
                      ____________________________________________________________
consensus             CCTGCCCGGAGGTCCATATTTCAGAATTGATCTGATCGTGATAACGTAACTAGTGGCGGT
 
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rJMSF044D11-          GGTGAAGGCACTCGACGGGAGGAACGGGGAACCTAGCGGTGTCGGTGCAATAATTGTAGA
                      ____________________________________________________________
consensus             GGTGAAGGCACTCGACGGGAGGAACGGGGAACCTAGCGGTGTCGGTGCAATAATTGTAGA
 
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rJMSF044D11-          CCATATGTTTTGCGTGAGTCCACATGAGCTGGTGGCTCTGGTGGAGTGTGAGGGCGGAAA
                      ____________________________________________________________
consensus             CCATATGTTTTGCGTGAGTCCACATGAGCTGGTGGCTCTGGTGGAGTGTGAGGGCGGAAA
 
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rJMSF044D11-          ATGTAGGGTCGTTCCACCAGTGCCGCCGCTTCTCGCCGTTAACGTTGCTGCTACTACTGC
                      ____________________________________________________________
consensus             ATGTAGGGTCGTTCCACCAGTGCCGCCGCTTCTCGCCGTTAACGTTGCTGCTACTACTGC
 
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rJMSF044D11-          ACCGCCTCATGTTCTCGGCGGCCGCCACCGTGGCCACGCACTCGCAACCGTCAATCTCAA
JMSF044D11+                                                                   TCAA
                      ____________________________________________________________
consensus             ACCGCCTCATGTTCTCGGCGGCCGCCACCGTGGCCACGCACTCGCAACCGTCAATCTCAA
 
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rJMSF044D11-          AGCCCTTGTAGGAGGCAACGAAGGGTGCGTGGCTCCAGTCCGTCTTCACCCTGCCACCTT
JMSF044D11+           AGCCCTTGTAGGAGGCAACGAAGGGTGCGTGGCTCCAGTCCGTCTTCACCCTGCCACCTT
                      ____________________________________________________________
consensus             AGCCCTTGTAGGAGGCAACGAAGGGTGCGTGGCTCCAGTCCGTCTTCACCCTGCCACCTT
 
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rJMSF044D11-          GTGTGGCCCAATCGTCGGCGTTCCAAATTGAGCTGTACACGCCCATGGCTTGGTC     
JMSF044D11+           GTGTGGCCCAATCGTCGGCGTTCCAAATTGAGCTGTACACGCCCATGGCTTGGTCCCTTG
                      ____________________________________________________________
consensus             GTGTGGCCCAATCGTCGGCGTTCCAAATTGAGCTGTACACGCCCATGGCTTGGTCCCTTG
 
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JMSF044D11+           GAAATGGTAGACCCTTGTGCTCCATGTTCGTGTGCACACGAATTGGTATGTCGTCAACTA
                      ____________________________________________________________
consensus             GAAATGGTAGACCCTTGTGCTCCATGTTCGTGTGCACACGAATTGGTATGTCGTCAACTA
 
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JMSF044D11+           GGAATACTACACGGTGTTGAGTCCAAAAGATGGAGTAACGATGGAAGTCCTTGGTTGGGT
                      ____________________________________________________________
consensus             GGAATACTACACGGTGTTGAGTCCAAAAGATGGAGTAACGATGGAAGTCCTTGGTTGGGT
 
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JMSF044D11+           CAAACCACAAGCTGAATCTTTGCTCTCTATTGCCCACACCATTGACGTAGACATTGGTCT
                      ____________________________________________________________
consensus             CAAACCACAAGCTGAATCTTTGCTCTCTATTGCCCACACCATTGACGTAGACATTGGTCT
 
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JMSF044D11+           GGAGAAGATAAGGTTCACCGGTGGTATTACCCAGGAACTCGAAATCAAATTCATGATGTT
                      ____________________________________________________________
consensus             GGAGAAGATAAGGTTCACCGGTGGTATTACCCAGGAACTCGAAATCAAATTCATGATGTT
 
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JMSF044D11+           TTGGACCATCCGACGACATATAAAAGGCAGTAACAGTGCCAGCAGAGTCACCCTCTACAA
                      ____________________________________________________________
consensus             TTGGACCATCCGACGACATATAAAAGGCAGTAACAGTGCCAGCAGAGTCACCCTCTACAA
 
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JMSF044D11+           GCTTGATCTGAGCGGTGACTTTCCCAAACATGTATTTGCTCTTGGAAGAGAAACCAGCAC
                      ____________________________________________________________
consensus             GCTTGATCTGAGCGGTGACTTTCCCAAACATGTATTTGCTCTTGGAAGAGAAACCAGCAC
 
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JMSF044D11+           CAGAATTGGTGTCTAGCTTCATCCTGAGAACCTCTCCTTCGTAGAGAAAATGATCCAGAG
                      ____________________________________________________________
consensus             CAGAATTGGTGTCTAGCTTCATCCTGAGAACCTCTCCTTCGTAGAGAAAATGATCCAGAG
 
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JMSF044D11+           CCCAACTCGGCTGAAAGAACTCATCAAATCTTGAGGTTGATGATGATGAGCTCATCACCA
                      ____________________________________________________________
consensus             CCCAACTCGGCTGAAAGAACTCATCAAATCTTGAGGTTGATGATGATGAGCTCATCACCA
 
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JMSF044D11+           GACCCAACATCACAAAAACCGCACAAACACCCATTAACGTTGGAAAAGAAAAAGGAGCCA
                      ____________________________________________________________
consensus             GACCCAACATCACAAAAACCGCACAAACACCCATTAACGTTGGAAAAGAAAAAGGAGCCA
 
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JMSF044D11+           TTTTTCGCATGTCAAAAATGTGGTATGAATTTCAGAGAGAAAGTGTGAAGCCAATCTGCA
                      ____________________________________________________________
consensus             TTTTTCGCATGTCAAAAATGTGGTATGAATTTCAGAGAGAAAGTGTGAAGCCAATCTGCA