Contig 010870:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021A14Sequence493010870 (6)523010870 (6)
JMFF027K09Sequence546010870 (6)522010870 (6)
JMSF043H18Sequence502010870 (6)449010870 (6)

Alignment

This contig is upended


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JMFF021A14-                                                                 CCTCTG
rJMFF027K09+                                                                CCTCTG
rJMFF021A14+                                                                CCTCTG
JMFF027K09-                                                                 CCTCTG
                      ____________________________________________________________
consensus                                                                   CCTCTG
 
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JMFF021A14-           ATCTATATATAAAAAATTTGACCTCATTGATTGCTTCCCGACTGTCTCATCATGGCCTCT
rJMFF027K09+          ATCTATATATAAAAAATTTGACCTCATTGATTGCTTCCCGACTGTCTCATCATGGCCTCT
rJMSF043H18+                                                 GACTGTCTCATCATGGCCTCT
rJMFF021A14+          ATCTATATATAAAAAATTTGACCTCATTGATTGCTTCCCGACTGTCTCATCATGGCCTCT
JMFF027K09-           ATCTATATATAAAAAATTTGACCTCATTGATTGCTTCCCGACTGTCTCATCATGGCCTCT
JMSF043H18-                                                  GACTGTCTCATCATGGCCTCT
                      ____________________________________________________________
consensus             ATCTATATATAAAAAATTTGACCTCATTGATTGCTTCCCGACTGTCTCATCATGGCCTCT
 
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JMFF021A14-           TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
rJMFF027K09+          TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
rJMSF043H18+          TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
rJMFF021A14+          TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
JMFF027K09-           TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
JMSF043H18-           TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
                      ____________________________________________________________
consensus             TCTTCCATCTTCTGATCATCTGTTCTTCATATATGTTTGCAAGCTAGGGGAGTTCATGGC
 
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JMFF021A14-           AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
rJMFF027K09+          AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
rJMSF043H18+          AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
rJMFF021A14+          AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
JMFF027K09-           AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
JMSF043H18-           AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
                      ____________________________________________________________
consensus             AGGATTTTGCCGCCGGCCGCCATGGATGCGGTGGCCGGGAGGGAGGACGATGAAAGAGCC
 
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JMFF021A14-           GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
rJMFF027K09+          GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
rJMSF043H18+          GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
rJMFF021A14+          GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
JMFF027K09-           GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
JMSF043H18-           GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
                      ____________________________________________________________
consensus             GAAGAGATCGATCAAATAAGTATAGCGGCGGCCGGCGGTTATACCAACTGCAACTCAGAA
 
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JMFF021A14-           GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
rJMFF027K09+          GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
rJMSF043H18+          GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
rJMFF021A14+          GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
JMFF027K09-           GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
JMSF043H18-           GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
                      ____________________________________________________________
consensus             GAAGAGGATGATCTGATCGATCGATATGGCCTGGTGATATGAGGAAATGCAAGTACTATG
 
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JMFF021A14-           TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
rJMFF027K09+          TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
rJMSF043H18+          TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
rJMFF021A14+          TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
JMFF027K09-           TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
JMSF043H18-           TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
                      ____________________________________________________________
consensus             TAGGCAAGTCTAATTCTTGGCTTTGCTCTTTTTATATATTCTTGTTTTTGTAATATCTTT
 
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JMFF021A14-           ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
rJMFF027K09+          ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
rJMSF043H18+          ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
rJMFF021A14+          ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
JMFF027K09-           ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
JMSF043H18-           ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
                      ____________________________________________________________
consensus             ACCTTACTGGTTTTGCTTGCTCAAAGAAAAAAAGGGGGGCTTTCCATTTGGAAACCCTAG
 
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JMFF021A14-           CTCCAAACATATATATTATTGTGNTTCTTCTCATGGAAGAAATTCCCATTTTCNTTTTTT
rJMFF027K09+          CTCCAAACATATATATTATTGTGTTTCTTCTCATGGAAGAAATTCCCATTTTCATTTTTT
rJMSF043H18+          CTCCAAACATATATATTATTGTGTTTCTTCTCATGGAAGAAATTCCCATTTTCATTTTTT
rJMFF021A14+          CTCCAAACATATATATTATTGTGTTTCTTCTCATGGAAGAAATTCCCATTTTCATTTTTT
JMFF027K09-           CTCCAAACATATATATTATTGTGTTTCTTCTCATGGAAGAAATTCCCATTTTCATTTTTT
JMSF043H18-           CTCCAAACATATATATTATTGTGTTTCTTCTCATGGAAGAAATTCCCATTTTCATTTTTT
                      ____________________________________________________________
consensus             CTCCAAACATATATATTATTGTGTTTCTTCTCATGGAAGAAATTCCCATTTTCATTTTTT
 
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JMFF021A14-           GTGGTCT                                                     
rJMFF027K09+          GTGGTCTTGTATCCATTCATATTGGT                                  
rJMSF043H18+          GTGGTCT                                                     
rJMFF021A14+          GTGGTCTTGTATCCATTCATATTGGT                                  
JMFF027K09-           GTGGTCTTGTATCCATTCATATTGGTTAAACAATTCAAGATTTTGTTCCCAAAAAAAAAA
JMSF043H18-           GTGGTCTTGTATCCATTCATATTGGTTAAACAATTCAAGATTTTGTTCCCAAAAAAAAAA
                      ____________________________________________________________
consensus             GTGGTCTTGTATCCATTCATATTGGTTAAACAATTCAAGATTTTGTTCCCAAAAAAAAAA