Contig 010862:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS151F03Sequence350010862 (4)
JMSF007H13Sequence475010862 (4)678005796 (3)ref|XP_006345371.1|3e-67PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum tuberosum]
JMSF010E15Sequence247010862 (4)739005796 (3)ref|XP_006345371.1|3e-85PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum tuberosum]
JMSF042O05Sequence761010862 (4)ref|XP_009605007.1|9e-15PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Nicotiana tomentosifo592005796 (3)ref|XP_006345371.1|2e-59PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF042O05+                              CTCAGAGATGCACAAACTGGTAATATTGACATTCTTGACCA
                      ____________________________________________________________
consensus                                CTCAGAGATGCACAAACTGGTAATATTGACATTCTTGACCA
 
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JMSF042O05+           CTGGAGATCCTTCATTTCCATTTGTGATTGCATTGGGAATCCCTCCATTTTGTTGAAGAA
                      ____________________________________________________________
consensus             CTGGAGATCCTTCATTTCCATTTGTGATTGCATTGGGAATCCCTCCATTTTGTTGAAGAA
 
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JMSF042O05+           CCCCTGAAGAGATATCTGCCACTGGCTTAACACCCCTGGCTCTCTCCTCGTGAGTGCTAT
                      ____________________________________________________________
consensus             CCCCTGAAGAGATATCTGCCACTGGCTTAACACCCCTGGCTCTCTCCTCGTGAGTGCTAT
 
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JMSF042O05+           GGGATTCTTGTCCTTTTGAGGAACCAGGCTGCATGATTGATGCAGTGCTGAAACTGCCAA
                      ____________________________________________________________
consensus             GGGATTCTTGTCCTTTTGAGGAACCAGGCTGCATGATTGATGCAGTGCTGAAACTGCCAA
 
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JMSF007H13+                       GGGCTGGTTTTGATGAATCATCCTGTGATACTTTCTTGTCAGAAGTCT
JMSF042O05+           ATGATAATTCAGGGGCTGGTTTTGATGAATCATCCTGTGATACTTTCTTGTCAGAAGTCT
                      ____________________________________________________________
consensus             ATGATAATTCAGGGGCTGGTTTTGATGAATCATCCTGTGATACTTTCTTGTCAGAAGTCT
 
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JMSF007H13+           TCTTTTCAGTATTTCCAGATGACTGTGTAAACCATGATTTGGTTTCATCCTCAGTAAAGG
JMSF042O05+           TCTTTTCAGTATTTCCAGATGACTGTGTAAACCATGATTTGGTTTCATCCTCAGTAAAGG
                      ____________________________________________________________
consensus             TCTTTTCAGTATTTCCAGATGACTGTGTAAACCATGATTTGGTTTCATCCTCAGTAAAGG
 
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JMSF010E15+                               GAATCACTCATGTTGCGTATAGAGCCTTGAACTAAACAAA
JMSF007H13+           AACCAAATAAAAGCATCTTAGAATCACTCATGTTGCGTATAGAGCCTTGAACTAAACAAA
JMFS151F03-                                                       CCTTGAACTAAACAAA
JMSF042O05+           AACCAAATAAAAGCATCTTAGAATCACTCATGTTGCGTATAGAGCCTTGAACTAAACAAA
                      ____________________________________________________________
consensus             AACCAAATAAAAGCATCTTAGAATCACTCATGTTGCGTATAGAGCCTTGAACTAAACAAA
 
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JMSF010E15+           CAACAACTTTTATTATTACGATCAGGTAATGAAGACAGGTGCATAGAAAAGTGGCGGAAA
JMSF007H13+           CAACAACTTTTATTATTACGATCAGGTAATGAAGACAGGTGCATAGAAAAGTGGCGGAAA
JMFS151F03-           CAACAACTTTTATTATTACGATCAGGTAATGAAGACAGGTGCATAGAAAAGTGGCGGAAA
JMSF042O05+           CAACAACTTTTATTATTACGATCAGGTAATGAAGACAGGTGCATAGAAAAGTGGCGGAAA
                      ____________________________________________________________
consensus             CAACAACTTTTATTATTACGATCAGGTAATGAAGACAGGTGCATAGAAAAGTGGCGGAAA
 
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JMSF010E15+           ACTAAGGGTAGTTTCTGAAAAGGAGGCCTTGTTGTTGCATAGCCGGTGCTATCAACAGAA
JMSF007H13+           ACTAAGGGTAGTTTCTGAAAAGGAGGCCTTGTTGTTGCATAGCCGGTGCTATCAACAGAA
JMFS151F03-           ACTAAGGGTAGTTTCTGAAAAGGAGGCCTTGTTGTTGCATAGCCGGTGCTATCAACAGAA
JMSF042O05+           ACTAAGGGTAGTTTCTGAAAAGGAGGCCTTGTTGTTGCATAGCCGGTGCTATCAACAGAA
                      ____________________________________________________________
consensus             ACTAAGGGTAGTTTCTGAAAAGGAGGCCTTGTTGTTGCATAGCCGGTGCTATCAACAGAA
 
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JMSF010E15+           GACATGAACTGAAGAGACAGAAACGAAGAGAGTATTGAAGGAATGCTCGGTCGTCGCAGA
JMSF007H13+           GACATGAACTGAAGAGACAGAAACGAAGAGAGTATTGAAGGAATGCTCGGTCGTCGCAGA
JMFS151F03-           GACATGAACTGAAGAGACAGAAACGAAGAGAGTATTGAAGGAATGCTCGGTCGTCGCAGA
JMSF042O05+           GACATGAACTGAAGAGACAGAAACGAAGAGAGTATTGAAGGAATGCTCGGTCGTCGCAGA
                      ____________________________________________________________
consensus             GACATGAACTGAAGAGACAGAAACGAAGAGAGTATTGAAGGAATGCTCGGTCGTCGCAGA
 
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JMSF010E15+           GATTGTTGGCCGACGATCCGATCGCC                                  
JMSF007H13+           GATTGTTGGCCGACGATCCGATCGCCAATCGAAGCATCAGCTGCAAAACCCAACCCGATT
JMFS151F03-           GATTGTTGGCCGACGATCCGATCGCCAATCGAAGCATCAGCTGCAAAACCCAACCCGATT
JMSF042O05+           GATTGTTGGCCGACGATCCGATCGCCAATCGAAGCATCAGCTGCAAAACCCAACCCGATT
                      ____________________________________________________________
consensus             GATTGTTGGCCGACGATCCGATCGCCAATCGAAGCATCAGCTGCAAAACCCAACCCGATT
 
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JMSF007H13+           GAATTCCCAGCTTTGTGCTGCGGCTTGCGGTGCGTTTATGGAGATGGAGGCGATGAAGTA
JMFS151F03-           GAATTCCCAGCTTTGTGCTGCGGCTTGCGGTGCGTTTATGGAGATGGAGGCGATGAAGTA
JMSF042O05+           GAATTCCCAGCTTTGTGCTGCGGCTTGCGGTGCGTTTATGGAGATGGAGGCGATGAAGTA
                      ____________________________________________________________
consensus             GAATTCCCAGCTTTGTGCTGCGGCTTGCGGTGCGTTTATGGAGATGGAGGCGATGAAGTA
 
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JMSF007H13+           TTCAGC                                                      
JMFS151F03-           TTCAGCGGCTCGGGTTTAGGTTTGTCATGTAAAA                          
JMSF042O05+           TTCAGCGGCTCGGGTTTAGGTTTGTCATGTAAAAAGGATATACTGCTACTTCTGATGATC
                      ____________________________________________________________
consensus             TTCAGCGGCTCGGGTTTAGGTTTGTCATGTAAAAAGGATATACTGCTACTTCTGATGATC