Contig 010855:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041I20Sequence721010855 (2)ref|XP_009779434.1|237PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Nicotiana sylvestris] ref|XP_00665010855 (2)ref|XP_009626414.1|1e-25PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Nicotiana tomentosiformis] ref|XP_00

Alignment

This contig is upended


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rJMSF041I20-                                       ACTCCATATTTACTTTAATGAAACCTTCCAC
                      ____________________________________________________________
consensus                                          ACTCCATATTTACTTTAATGAAACCTTCCAC
 
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rJMSF041I20-          TCTATATTCATACCAAGATTGCAATAAAGACTAGCATTATGCCTTAACAATGTAGCCCGC
                      ____________________________________________________________
consensus             TCTATATTCATACCAAGATTGCAATAAAGACTAGCATTATGCCTTAACAATGTAGCCCGC
 
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rJMSF041I20-          CCAGAAGGCAGAATGGCTTCTTCCATCCTGAGCTCATTCTTCCTGCTCTTGATCAAGCTC
                      ____________________________________________________________
consensus             CCAGAAGGCAGAATGGCTTCTTCCATCCTGAGCTCATTCTTCCTGCTCTTGATCAAGCTC
 
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rJMSF041I20-          CATCTATGCAACAAAAATGGCAGACTATTTCCCAATTCTTGACGATTGTCCCTAATGCAG
                      ____________________________________________________________
consensus             CATCTATGCAACAAAAATGGCAGACTATTTCCCAATTCTTGACGATTGTCCCTAATGCAG
 
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rJMSF041I20-          AAGCAATCTCCACCAGGGGGGCATTAGAGGTTATACCAACTCCTCAAGTCTCAGCCACCC
                      ____________________________________________________________
consensus             AAGCAATCTCCACCAGGGGGGCATTAGAGGTTATACCAACTCCTCAAGTCTCAGCCACCC
 
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rJMSF041I20-          CCAAAAAGAGAAGTTTTACGACTTGGTAAAACTCAATGCGGGTGTGTATTGCAGACTATT
                      ____________________________________________________________
consensus             CCAAAAAGAGAAGTTTTACGACTTGGTAAAACTCAATGCGGGTGTGTATTGCAGACTATT
 
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rJMSF041I20-          GATTTGGTGGCTTCCGTGCTTCTTTTTCAACTTGGTTTACATTGCTGACAACTACTTGAA
                      ____________________________________________________________
consensus             GATTTGGTGGCTTCCGTGCTTCTTTTTCAACTTGGTTTACATTGCTGACAACTACTTGAA
 
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rJMSF041I20-          CTTTTCCAGATACAACCTCAATCTGCTCCTCAATATATTTCAACAAAGTGTTTAGCTGGT
                      ____________________________________________________________
consensus             CTTTTCCAGATACAACCTCAATCTGCTCCTCAATATATTTCAACAAAGTGTTTAGCTGGT
 
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rJMSF041I20-          CTCTGTACAACTCACAGAGCCTATCCTGACGGTTCAACTCCATAGTCAGCTCATGTATCC
JMSF041I20+                                                                     CC
                      ____________________________________________________________
consensus             CTCTGTACAACTCACAGAGCCTATCCTGACGGTTCAACTCCATAGTCAGCTCATGTATCC
 
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rJMSF041I20-          TCCGGTCTTTATGGTCCATAGCATTCCGGGAAGGGCGACCAGAAACAATCAATGGATGAG
JMSF041I20+           TCCGGTCTTTATGGTCCATAGCATTCCGGGAAGGGCGACCAGAAACAATCAATGGATGAG
                      ____________________________________________________________
consensus             TCCGGTCTTTATGGTCCATAGCATTCCGGGAAGGGCGACCAGAAACAATCAATGGATGAG
 
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rJMSF041I20-          TATGCTCCTTCACGAATCTGGTAACAACCCATTTACCAGACTNATCAACCTTTNACCAGC
JMSF041I20+           TATGCTCCTTCACGAATCTGGTAACAACCCATTTACCAGACTTATCAACCTTT-ACCAGC
                      ____________________________________________________________
consensus             TATGCTCCTTCACGAATCTGGTAACAACCCATTTACCAGACTTATCAACCTTTNACCAGC
 
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rJMSF041I20-          ATCATTGCCTTGCATCCTNCTCGTGTGCTCGTTC                          
JMSF041I20+           ATCATTGCCTTGCATCCTTCTCGTGTGCTCGTTCTTGGCTTCCTAGCTGGCCCGAATTGG
                      ____________________________________________________________
consensus             ATCATTGCCTTGCATCCTTCTCGTGTGCTCGTTCTTGGCTTCCTAGCTGGCCCGAATTGG
 
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JMSF041I20+           TCTTTCATTTTCACATAATAACCCTGCTTATTACACGAGAGCCGCCTAGAAAGAATCCTC
                      ____________________________________________________________
consensus             TCTTTCATTTTCACATAATAACCCTGCTTATTACACGAGAGCCGCCTAGAAAGAATCCTC
 
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JMSF041I20+           TTGTCAACTTCTGACCTCCGACACTGATCAATGCGCATCACAAAGCCGGCACGCCTAGCA
                      ____________________________________________________________
consensus             TTGTCAACTTCTGACCTCCGACACTGATCAATGCGCATCACAAAGCCGGCACGCCTAGCA
 
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JMSF041I20+           TAGTTGTCATAAAATTCCTTGGCAGCATCTTCAGACTCAAACTCCATTCCCACCACTGGT
                      ____________________________________________________________
consensus             TAGTTGTCATAAAATTCCTTGGCAGCATCTTCAGACTCAAACTCCATTCCCACCACTGGT
 
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JMSF041I20+           TCTTGAACTCTACTTTCTTCACCCGAATCTAACCGCCTTTCAGCAGAAGCAGAACTGTCA
                      ____________________________________________________________
consensus             TCTTGAACTCTACTTTCTTCACCCGAATCTAACCGCCTTTCAGCAGAAGCAGAACTGTCA
 
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JMSF041I20+           CCAATAGCAGCTTCAACCTCTATGTCCATGGTTTGGACAGAGGAGGTGCCGTCGTCTCGA
                      ____________________________________________________________
consensus             CCAATAGCAGCTTCAACCTCTATGTCCATGGTTTGGACAGAGGAGGTGCCGTCGTCTCGA
 
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JMSF041I20+           TTGATTGCCAGATTTTTGAAAATTTTAGAGGTTTCTGCAGAATCTTCAATTCGATTTCTC
                      ____________________________________________________________
consensus             TTGATTGCCAGATTTTTGAAAATTTTAGAGGTTTCTGCAGAATCTTCAATTCGATTTCTC
 
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JMSF041I20+           AGAGATAGTATTGTCGCGTCGATTTTCAACGCCGGAGGTTTTGAGCTTTTCACTTTATCT
                      ____________________________________________________________
consensus             AGAGATAGTATTGTCGCGTCGATTTTCAACGCCGGAGGTTTTGAGCTTTTCACTTTATCT
 
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JMSF041I20+           TGCTGAGGAGAATTGAACGCCGGCGTTCATCGTCCGGGCACGAGTGTTACTTTCTTTCCG
                      ____________________________________________________________
consensus             TGCTGAGGAGAATTGAACGCCGGCGTTCATCGTCCGGGCACGAGTGTTACTTTCTTTCCG
 
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JMSF041I20+           GTGACCACTGGAAAACCTAACTAAACTGTCACCACCAACGCCCACTGCTCATTGCTATTC
                      ____________________________________________________________
consensus             GTGACCACTGGAAAACCTAACTAAACTGTCACCACCAACGCCCACTGCTCATTGCTATTC