| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP003C11 | Sequence | 614 | 010854 (4) | ref|XP_009600966.1| | 3e-97 | PREDICTED: uncharacterized protein LOC104096302 isoform X2 [Nicotiana tomentosi | |||||
| JMFF051A16 | Sequence | 566 | 010854 (4) | ref|XP_009600966.1| | 3e-18 | PREDICTED: uncharacterized protein LOC104096302 isoform X2 [Nicotiana tomentosi | 583 | 009861 (3) | ref|XP_011011629.1| | 7e-14 | PREDICTED: LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associ |
| JMSF003O01 | Sequence | 311 | 010854 (4) | 738 | 009861 (3) | ref|XP_006361556.1| | 1e-64 | PREDICTED: LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associ | |||
| JMSF041I10 | Sequence | 797 | 010854 (4) | ref|XP_009779161.1| | 9e-47 | PREDICTED: uncharacterized protein LOC104228400 isoform X2 [Nicotiana sylvestri | 812 | 009861 (3) | ref|XP_006361556.1| | 5e-139 | PREDICTED: LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associ |
This contig is upended
. : . : . : . : . : . :
JMCP003C11+ GCAGTGA
____________________________________________________________
consensus GCAGTGA
. : . : . : . : . : . :
JMCP003C11+ CCATCGATTTGGCTCACGCATGATAAATGGGAAGAGTTCAGATGGTTGCATAGTTTgaGA
____________________________________________________________
consensus CCATCGATTTGGCTCACGCATGATAAATGGGAAGAGTTCAGATGGTTGCATAGTTTCTGA
. : . : . : . : . : . :
JMCP003C11+ AAGCAGGAAGTGATCAACTGCTTCCGCAAAATGTAAGTCAAACAGCAAAAGAAATCCCAC
____________________________________________________________
consensus AAGCAGGAAGTGATCAACTGCTTCCGCAAAATGTAAGTCAAACAGCAAAAGAAATCCCAC
. : . : . : . : . : . :
JMCP003C11+ TTGAGCATGTACAAAGGATAGCATATCCTTTGTAATTTCACCTTCGTTCCAGAGCTCGTC
____________________________________________________________
consensus TTGAGCATGTACAAAGGATAGCATATCCTTTGTAATTTCACCTTCGTTCCAGAGCTCGTC
. : . : . : . : . : . :
JMCP003C11+ AATCAAAGAGACAGCTTCACCAACATTTTTCTTGCGCAGAAGATCCTTAATTTGATCTTC
____________________________________________________________
consensus AATCAAAGAGACAGCTTCACCAACATTTTTCTTGCGCAGAAGATCCTTAATTTGATCTTC
. : . : . : . : . : . :
JMCP003C11+ TGGTGGCACCTTCTGGTAACAGATGACCTTGGAGCTTGTTGCCAAAGCAACAAGTTTTCC
____________________________________________________________
consensus TGGTGGCACCTTCTGGTAACAGATGACCTTGGAGCTTGTTGCCAAAGCAACAAGTTTTCC
. : . : . : . : . : . :
JMCP003C11+ TCTGTCATTCCCTTCATCTGCCACAATACACTTATTACCTACTTCATCATCAAATGGAAC
____________________________________________________________
consensus TCTGTCATTCCCTTCATCTGCCACAATACACTTATTACCTACTTCATCATCAAATGGAAC
. : . : . : . : . : . :
JMCP003C11+ CCGCTGCACACAGTTTCCAGATTTTCTGTGATACAGTTCCACCTTCCCATTCCTCATCAC
____________________________________________________________
consensus CCGCTGCACACAGTTTCCAGATTTTCTGTGATACAGTTCCACCTTCCCATTCCTCATCAC
. : . : . : . : . : . :
JMCP003C11+ GACTACACACGACCCTAGCTCTCCTATTGAATCTGGGGCTTCACGAAATACCAAGCTGCC
____________________________________________________________
consensus GACTACACACGACCCTAGCTCTCCTATTGAATCTGGGGCTTCACGAAATACCAAGCTGCC
. : . : . : . : . : . :
JMCP003C11+ ACCTACAGGCTGACCTTCAGCATCCACAATAACACCAACATTATCCATCATTAGCATAAC
JMSF041I10+ TCCATCATTAGCATAAC
____________________________________________________________
consensus ACCTACAGGCTGACCTTCAGCATCCACAATAACACCAACATTATCCATCATTAGCATAAC
. : . : . : . : . : . :
JMCP003C11+ CTTCCATTCCTTACACAGTATTTTCATCAGCGGTGGCCCGGACAAATCAGGCAGCGAAAA
JMSF041I10+ CTTCCATTCCTTACACAGTATTTTCATCAGCGGTGGCCCGGACAAATCAGGCAGCGAAAA
____________________________________________________________
consensus CTTCCATTCCTTACACAGTATTTTCATCAGCGGTGGCCCGGACAAATCAGGCAGCGAAAA
. : . : . : . : . : . :
JMCP003C11+ TAACAAC
JMSF041I10+ TAACAACCCACTCTGCCCACTTGAACAAGAATATAAATAATATCCATTTCTCGTGCCAAA
____________________________________________________________
consensus TAACAACCCACTCTGCCCACTTGAACAAGAATATAAATAATATCCATTTCTCGTGCCAAA
. : . : . : . : . : . :
JMSF041I10+ AATTATCGAATCATCCACCCAAGCTAAACTATTAATTCCCTCAGAAACACCCGGAAATTC
____________________________________________________________
consensus AATTATCGAATCATCCACCCAAGCTAAACTATTAATTCCCTCAGAAACACCCGGAAATTC
. : . : . : . : . : . :
JMFF051A16+ AAAGATCCACTGAAAACCAACTCAACTAGCACTAATTTCTCCCCAAC
JMSF041I10+ CTTCAGAATCACTAAAGATCCACTGAAAACCAACTCAACTAGCACTAATTTCTTCCCAAC
____________________________________________________________
consensus CTTCAGAATCACTAAAGATCCACTGAAAACCAACTCAACTAGCACTAATTTCTTCCCAAC
. : . : . : . : . : . :
JMFF051A16+ AGCAACCGCAAAGAAACACCCGTCTTCTTTCAGTNTCATCCCATTTAACCGCTGTACAAC
JMSF041I10+ AGCAACCGCAAAGAAACACCCGTCTTCTTTCAGTTTCATCCCATTTAACCGCTGTACAAC
____________________________________________________________
consensus AGCAACCGCAAAGAAACACCCGTCTTCTTTCAGTTTCATCCCATTTAACCGCTGTACAAC
. : . : . : . : . : . :
JMFF051A16+ ATTGTCG---CCAGCGCTGATCCTACTACTTCGAAATCTCCGAGTTAGAGCAGTAACCCC
JMSF041I10+ ATTGTCGCCACCAGTGCTGATCCTACTACTTCGAAATCTCCGAGTTAGAGCAGTAACCCC
____________________________________________________________
consensus ATTGTCGCCACCAGTGCTGATCCTACTACTTCGAAATCTCCGAGTTAGAGCAGTAACCCC
. : . : . : . : . : . :
JMFF051A16+ CTTGATCAGACTGAGTTTCTTAATCGGGTCAAGCAAAAGCAAATCAACTAAGTAAAGAAA
JMSF041I10+ CTTGATCAGACTGAGTTTCTTAATCGGGTCAAGCAAAAGCAAATCAACTAAGTAAAGAAA
____________________________________________________________
consensus CTTGATCAGACTGAGTTTCTTAATCGGGTCAAGCAAAAGCAAATCAACTAAGTAAAGAAA
. : . : . : . : . : . :
JMSF003O01+ TCATCGAGGACGTGAATTGAATTTACAGG
JMFF051A16+ TCCATCCGACACTACAATTATTTTACCGATATCATCGAGGACGTGAATTGAATTTACAGG
JMSF041I10+ TCCATCCGACACTACAATTATTTTACCGATATCATCGAGGACGTGAATTGAATTTACAGG
____________________________________________________________
consensus TCCATCCGACACTACAATTATTTTACCGATATCATCGAGGACGTGAATTGAATTTACAGG
. : . : . : . : . : . :
JMSF003O01+ GCCGCCACCGACAGTGACTTGGCGGTGACAAACTAGAGCCGAGGAGGTGCTGGGAGAGTT
JMFF051A16+ GCCGCCACCGACAGTGACTTGGCGGTGACAAACTAGAGCCGAGGAGGTGCTGGGAGAGTT
JMSF041I10+ GCCGCCACCGACAGTGACTTGGCGGTGACAAACTAGAGCCGAGGAGGTGCTGGGAGAGTT
____________________________________________________________
consensus GCCGCCACCGACAGTGACTTGGCGGTGACAAACTAGAGCCGAGGAGGTGCTGGGAGAGTT
. : . : . : . : . : . :
JMSF003O01+ AGGGTTTACAGATAGCGAGAGCAGAGAGCCCGAAGTCGTGCCAAGGTAGATTAATGCTTG
JMFF051A16+ AGGGTTTACAGATAGCGAGAGCAGAGAGCCCGAAGTCGTGCCAAGGTAGATTAATGCTTG
JMSF041I10+ AGGGTTTACAGATAGCGAGAGCAGAGAGCCCGAAGTCGTGCCAAGGTAGATTAATGCTTG
____________________________________________________________
consensus AGGGTTTACAGATAGCGAGAGCAGAGAGCCCGAAGTCGTGCCAAGGTAGATTAATGCTTG
. : . : . : . : . : . :
JMSF003O01+ GGAATCGGAAAGCGTGGAGATTGCGAGAGATCGAATTTGAGAGGAATTGGAATCTAAAGG
JMFF051A16+ GGAATCGGAAAGCGTGGAGATTGCGAGAGATCGAATTTGAGAGGAATTGGAATCTAAAGG
JMSF041I10+ GGAATCGGAAAGCGTGGAGATTGCGAGAGATCGAATTTGAGAGGAATTGGAATCTAAAGG
____________________________________________________________
consensus GGAATCGGAAAGCGTGGAGATTGCGAGAGATCGAATTTGAGAGGAATTGGAATCTAAAGG
. : . : . : . : . : . :
JMSF003O01+ GTTGAACTCTGCAAGGAGCTTGAGAACAGTACGGGAACGGGACTTGGATTCCGGTTCGGG
JMFF051A16+ GTTGAACTCTGCAAGGAGCTTGAGAACAGTACGGGAACGGGACTTGGATTCCGGTTCGGG
JMSF041I10+ GTTGAACTCTGCAAGGAGCTTGAGAACAGTACGGGAACGGGACTTGGATTCCGGTTCGGG
____________________________________________________________
consensus GTTGAACTCTGCAAGGAGCTTGAGAACAGTACGGGAACGGGACTTGGATTCCGGTTCGGG
. : . : . : . : . : . :
JMSF003O01+ TTTGGTGCTGGGTTTCGGATTCGCCATCGGAGGAATCCAGT
JMFF051A16+ TTTGGTGCTGGGTTTCGGATTCGCCATCGGAGGAATCCAGT
JMSF041I10+ TTTGGTGCTGGGTTTCGGATTCGCCATCGGAGGAATCCAGTGGGCAGCAACAAGAACCCC
____________________________________________________________
consensus TTTGGTGCTGGGTTTCGGATTCGCCATCGGAGGAATCCAGTGGGCAGCAACAAGAACCCC