Contig 010853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010N06Sequence360010853 (2)746019242ref|XP_010109151.1|3e-32Anaphase-promoting complex subunit cdc20 [Morus notabilis] gb|EXC21080.1| Anapha
JMSF041H05Sequence811010853 (2)ref|XP_009759176.1|6e-55PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic644022621ref|XP_009759177.1|8e-08PREDICTED: cell division cycle 20.5, cofactor of APC complex-like isoform X1 [N

Alignment

This contig is upended


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JMSF041H05+                                        AGCATTTCATCAAACAGTTCATAGACCATAC
                      ____________________________________________________________
consensus                                          AGCATTTCATCAAACAGTTCATAGACCATAC
 
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JMSF041H05+           CAGTTCGACCCCTTTTCATCAAAATTGAGAACAAAGTATTGAATGTAACTACTGATGGGG
                      ____________________________________________________________
consensus             CAGTTCGACCCCTTTTCATCAAAATTGAGAACAAAGTATTGAATGTAACTACTGATGGGG
 
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JMSF041H05+           AAATCCCAATTACCTTCATAGAGGTGAAAAGCTTCAATGATTCCTGAAAGAGCCCAGCTA
                      ____________________________________________________________
consensus             AAATCCCAATTACCTTCATAGAGGTGAAAAGCTTCAATGATTCCTGAAAGAGCCCAGCTA
 
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JMSF041H05+           CGGCGTAATTCTTGATCAGGCTGTTAAAGAACCTGGCTTCGAGCGGCACCGCGCCATTAG
                      ____________________________________________________________
consensus             CGGCGTAATTCTTGATCAGGCTGTTAAAGAACCTGGCTTCGAGCGGCACCGCGCCATTAG
 
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JMSF041H05+           ACCTCTTGGGGATGGAGAAGAGGAAGTTCCGGGCGGTGTTGAGGTTCCTCTCGGTTCCGA
                      ____________________________________________________________
consensus             ACCTCTTGGGGATGGAGAAGAGGAAGTTCCGGGCGGTGTTGAGGTTCCTCTCGGTTCCGA
 
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JMSF041H05+           GGAGCTCCAGCATGCGGAAATAGCATTGGGATGTGAGTGCGAAGCCTTTTTGCTCGGCCC
                      ____________________________________________________________
consensus             GGAGCTCCAGCATGCGGAAATAGCATTGGGATGTGAGTGCGAAGCCTTTTTGCTCGGCCC
 
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JMSF010N06+                                 CCGGGGAGTTTTGAGGAGGCGGATGGAGTGGATAACGG
JMSF041H05+           AGACGAAGAATTTCAAGGCTTTCCGGGGAGTTTTGAGGAGGCGGATGGAGTGGATAACGG
                      ____________________________________________________________
consensus             AGACGAAGAATTTCAAGGCTTTCCGGGGAGTTTTGAGGAGGCGGATGGAGTGGATAACGG
 
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JMSF010N06+           TGGTCTCGGAGAGAGAGGGGCCGGCGAGAGCGGAGAGAGAGGACTCGGTTTGAGGTGACC
JMSF041H05+           TGGTCTCGGAGAGAGAGGGGCCGGCGAGAGCGGAGAGAGAGGACTCGGTTTGAGGTGACC
                      ____________________________________________________________
consensus             TGGTCTCGGAGAGAGAGGGGCCGGCGAGAGCGGAGAGAGAGGACTCGGTTTGAGGTGACC
 
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JMSF010N06+           ATGGCTGGAACTTAATGAGCTCAGCCAAGGCTAGAGCCTTCTTTCGAGAGCTCAATTTGG
JMSF041H05+           ATGGCTGGAACTTAATGAGCTCAGCCAAGGCTAGAGCCTTCTTTCGAGAGCTCAATTTGG
                      ____________________________________________________________
consensus             ATGGCTGGAACTTAATGAGCTCAGCCAAGGCTAGAGCCTTCTTTCGAGAGCTCAATTTGG
 
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JMSF010N06+           GCTTCGCAGCGTCAGGGAGTTTCGCGTCATTGTCGTCTGCGGCAGCGGCAGCGGCGGCGT
JMSF041H05+           GCTTCGCAGCGTCAGGGAGTTTCGCGTCATTGTCGTCTGCGGCAGCGGCAGCGGCGGCGT
                      ____________________________________________________________
consensus             GCTTCGCAGCGTCAGGGAGTTTCGCGTCATTGTCGTCTGCGGCAGCGGCAGCGGCGGCGT
 
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JMSF010N06+           TGGAAGGACCGGAAAAGAGCTGGGAGGCGGCGGCGGCGGTGGAAGGAGGGGAAAAGAGCT
JMSF041H05+           TGGAAGGACCGGAAAAGAGCTGGGAGGCGGCGGCGGCGGTGGAAGGAGGGGAAAAGAGCT
                      ____________________________________________________________
consensus             TGGAAGGACCGGAAAAGAGCTGGGAGGCGGCGGCGGCGGTGGAAGGAGGGGAAAAGAGCT
 
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JMSF010N06+           GGCTGAGAGTGGAAAGGCAATGTGAAAATGGGTGTTGGGCGTTTCTGCCATTGGCGTTTG
JMSF041H05+           GGCTGAGAGTGGAAAGGCAATGTGAAAATGGGTGTTGGGCGTTTCTGCCATTGGCGTTTG
                      ____________________________________________________________
consensus             GGCTGAGAGTGGAAAGGCAATGTGAAAATGGGTGTTGGGCGTTTCTGCCATTGGCGTTTG
 
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JMSF010N06+           GGTTGAAAAGCAGATGCCTTT                                       
JMSF041H05+           GGTTGAAAAACAGATGCCTTTGAAGATTGGGAATCATCGCCATATCCCCCGCAAATCTGC
                      ____________________________________________________________
consensus             GGTTGAAAAGCAGATGCCTTTGAAGATTGGGAATCATCGCCATATCCCCCGCAAATCTGC
 
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JMSF041H05+           TATTCATCTTTTCTTGGAATGATACATCGACAGTGAAACCGCGACGAGAACGGAACCTTC
                      ____________________________________________________________
consensus             TATTCATCTTTTCTTGGAATGATACATCGACAGTGAAACCGCGACGAGAACGGAACCTTC