| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007L01 | Sequence | 457 | 010847 (6) | ref|XP_009617917.1| | 3e-14 | PREDICTED: pheophytinase, chloroplastic [Nicotiana tomentosiformis] ref|XP_00961 | 799 | 010847 (6) | ref|XP_009617917.1| | 3e-129 | PREDICTED: pheophytinase, chloroplastic [Nicotiana tomentosiformis] ref|XP_00961 |
| JMSF014L04 | Sequence | 514 | 010847 (6) | ref|XP_009617917.1| | 2e-20 | PREDICTED: pheophytinase, chloroplastic [Nicotiana tomentosiformis] ref|XP_00961 | 527 | 010847 (6) | ref|XP_009617917.1| | 2e-71 | PREDICTED: pheophytinase, chloroplastic [Nicotiana tomentosiformis] ref|XP_00961 |
| JMSF040M17 | Sequence | 649 | 010847 (6) | ref|XP_009617917.1| | 1e-44 | PREDICTED: pheophytinase, chloroplastic [Nicotiana tomentosiformis] ref|XP_00961 | 823 | 010847 (6) | ref|XP_011096167.1| | 3e-122 | PREDICTED: pheophytinase, chloroplastic isoform X2 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF040M17- AGAT
____________________________________________________________
consensus AGAT
. : . : . : . : . : . :
rJMSF014L04- ATTCTAGACCGAAGAATTGACACCACTAACATTTTAGTTTCCAAGTT
rJMSF040M17- ATCAAGAATATACATTCTAGACCGAAGAATTGACACCACTAACATTTTAGTTTCCAAGTT
____________________________________________________________
consensus ATCAAGAATATACATTCTAGACCGAAGAATTGACACCACTAACATTTTAGTTTCCAAGTT
. : . : . : . : . : . :
rJMSF014L04- ATTTACAAAACTAGTANAATTCACTATATAGTTGGTATGAGATCGAGCTTACAAAGGTGG
rJMSF040M17- ATTTACAAAACTAGTAAAATTCACTATATAGTTGGTATGAGATCGAGCTTACAAAGGTGG
rJMSF007L01- CAAAACTAGTAAAATTCACTATATAGTTGGTATGAGATCGAGCTTACAAAGGTGG
____________________________________________________________
consensus ATTTACAAAACTAGTAAAATTCACTATATAGTTGGTATGAGATCGAGCTTACAAAGGTGG
. : . : . : . : . : . :
rJMSF014L04- AAGACTANCCAGCCNTGGAAGAAGCTTGTCATGGACAAGATCGGGCCTATCATCGTGAGG
rJMSF040M17- AAGACTAGCCAGCCATGGAAGAAGCTTGTCATGGACAAGATCGGGCCTATCATCGTGAGG
rJMSF007L01- AAGACTAGCCAGCCATGGAAGAAGCTTGTCATGGACAAGATCGGGCCTATCATCGTGAGG
____________________________________________________________
consensus AAGACTAGCCAGCCATGGAAGAAGCTTGTCATGGACAAGATCGGGCCTATCATCGTGAGG
. : . : . : . : . : . :
rJMSF014L04- GCAATGCCCGACGCCTTCCAAAAGAAAGAGCTTCACGTTTGGCAACTGATAAGGCAAGGA
rJMSF040M17- GCAATGCCCGACGCCTTCCAAAAGAAAGAGCTTCACGTTTGGCAACTGAGAAGGCAAGGA
rJMSF007L01- GCAATGCCCGACGCCTTCCAAAAGAAAGAGCTTCACGTTTGGCAACTGAGAAGGCAAGGA
____________________________________________________________
consensus GCAATGCCCGACGCCTTCCAAAAGAAAGAGCTTCACGTTTGGCAACTGAGAAGGCAAGGA
. : . : . : . : . : . :
rJMSF014L04- CGAGAANTACTTGCCAACAGGTCCATCGATAGGGGTAAAAGGATCCCGGTCACCCCAAAG
rJMSF040M17- CGAGAAGTACTTGCCAACAGGTCCATCGATAGGGGTAAAAGGATCCCGGTCACCCCAAAG
rJMSF007L01- CGAGAAGTACTTGCCAACAGGTCCATCGATAGGGGTAAAAGGATCCCGGTCACCCCAAAG
____________________________________________________________
consensus CGAGAAGTACTTGCCAACAGGTCCATCGATAGGGGTAAAAGGATCCCGGTCACCCCAAAG
. : . : . : . : . : . :
rJMSF014L04- GACCAGGACAGGCAACATGATTTGTGGCACCAGTGTCACAGGGTTTGGCCCGGGAGGACC
rJMSF040M17- GACCAGGACAGGCAACATGATTTGTGGCACCAGTGTCACAGGGTTTGGCCCGGGAGGACC
rJMSF007L01- GACCAGGACAGGCAACATGATTTGTGGCACCAGTGTCACAGGGTTTGGCCCGGGAGGACC
____________________________________________________________
consensus GACCAGGACAGGCAACATGATTTGTGGCACCAGTGTCACAGGGTTTGGCCCGGGAGGACC
. : . : . : . : . : . :
rJMSF014L04- CGTGACAATGGAAACGAAAGCCTCAAGTGCTCCCTCGTCGTTGGCTGGTCCCCTGATGAT
rJMSF040M17- CGTGACAATGGAAACGAAAGCCTCAAGTGCTCCCTCGTCGTTGGCTGGTCCCCTGATGAT
rJMSF007L01- CGTGACAATGGAAACGAAAGCCTCAAGTGCTCCCTCGTCGTTGGCTGGTCCCCTGATGAT
____________________________________________________________
consensus CGTGACAATGGAAACGAAAGCCTCAAGTGCTCCCTCGTCGTTGGCTGGTCCCCTGATGAT
. : . : . : . : . : . :
rJMSF014L04- CTCCACCAGTTCTTCATCGACAGATTCTTTATTCCCATACACTGACATCAAGACGTTCTT
rJMSF040M17- CTCCACCAGTTCTTCATCGACAGATTCTTTATTCCCATACACTGACATCAAGACGTTCTT
rJMSF007L01- CTCCACCAGTTCTTCATCGACAGATTCTTTATTCCCATACACTGACATCAAGACGTTCTT
____________________________________________________________
consensus CTCCACCAGTTCTTCATCGACAGATTCTTTATTCCCATACACTGACATCAAGACGTTCTT
. : . : . : . : . : . :
rJMSF014L04- GATATTTTCGCTCTGTCTCACGCGATCAAAGAGAGCTGAAGCTATCGCCTTTTGTTGGAG
rJMSF040M17- GATATTTTCGCTCTGTCTCACGCGATCAAAGAGAGCTGAAGCTATCGCCTTTTGTTGGAG
rJMSF007L01- GATATTTTCGCTCTGTCTCACGCGATCAAAGAGAGCTGAAGCTATCGCCTTTTGTTGGAG
____________________________________________________________
consensus GATATTTTCGCTCTGTCTCACGCGATCAAAGAGAGCTGAAGCTATCGCCTTTTGTTGGAG
. : . : . : . : . : . :
rJMSF040M17- TAAGAAGTCAATCAACCATAGCAAAGGCAGGAGGAGTTTGATCCTCCAATCATCAACTAT
rJMSF007L01- TAAGAAGTCAATCAACCATAGCAAAGGCAGGAGGAGTTTGATCCTCCAATCATCAACTAT
____________________________________________________________
consensus TAAGAAGTCAATCAACCATAGCAAAGGCAGGAGGAGTTTGATCCTCCAATCATCAACTAT
. : . : . : . : . : . :
rJMSF040M17- GGCCTTGTTGTTCATCCCTCCTGCACAGTTTAACAGAACGAGCCCTCGAATCAACAAGTT
rJMSF007L01- GGCCTTGTTGTTCATCCCTCCTGCACAGTTTAACAGAACGAGCCCTCGAATCAACAAGTT
____________________________________________________________
consensus GGCCTTGTTGTTCATCCCTCCTGCACAGTTTAACAGAACGAGCCCTCGAATCAACAAGTT
. : . : . : . : . : . :
rJMSF040M17- CTGGGAATCTGCAGCAGCAATCACACAGGCGAGACTCCCAACAGAATTCCCCACTAGCAC
rJMSF007L01- CTGGGAATCTGCAGCAGCAATCACACAGGCGAGACTCCCAACAGAATTCCCCACTAGCAC
____________________________________________________________
consensus CTGGGAATCTGCAGCAGCAATCACACAGGCGAGACTCCCAACAGAATTCCCCACTAGCAC
. : . : . : . : . : . :
rJMSF040M17- ACTTGGCATTTGGACCACTTCACTCAAGAAATCCAGAATCAACCGAGCCCAATTCTCCAT
rJMSF007L01- ACTTGGCATTTGGACCACTTCACTCAAGAAATCCAGAATCAACCGAGCCCAATTCTCCAT
JMSF040M17+ GGACCACTTCACTCAAGAAATCCAGAATCAACCGAGCCCAATTCTCCAT
____________________________________________________________
consensus ACTTGGCATTTGGACCACTTCACTCAAGAAATCCAGAATCAACCGAGCCCAATTCTCCAT
. : . : . : . : . : . :
rJMSF040M17- GGAATATGCATACCCCGTTGGCTTGTCTGATTCGCCAAA
rJMSF007L01- GGAATATGCATACCCCGTTGGCTTGTCTGATTCGCCAAAACCAAGAAGATCAATCGCGTA
JMSF040M17+ GGAATATGCATACCCCGTTGGCTTGTCTGATTCGCCAAAACCAAGAAGATCAATCGCGTA
____________________________________________________________
consensus GGAATATGCATACCCCGTTGGCTTGTCTGATTCGCCAAAACCAAGAAGATCAATCGCGTA
. : . : . : . : . : . :
rJMSF007L01- AACTGTATAATCCT
JMSF007L01+ GGCAACAGAAGCACC
JMSF014L04+ CAAGACAGCAATGTTCCTTCGCCAATGGGCAACAGAAGCACC
JMSF040M17+ AACTGTATAATCCTTCGCCAAGACAGCAATGTTCCTTCGCCAATGGGCAACAGAAGCACC
____________________________________________________________
consensus AACTGTATAATCCTTCGCCAAGACAGCAATGTTCCTTCGCCAATGGGCAACAGAAGCACC
. : . : . : . : . : . :
JMSF007L01+ AAAGCCATGGACTAGAACTATGGCAGGGCGAGAAGGGCTGCCATTTCGCGCTTGGCAGAC
JMSF014L04+ AAAGCCATGGACTAGAACTATGGCAGGGCGAGAAGGGCTGCCATTTCGCGCTTGGCAGAC
JMSF040M17+ AAAGCCATGGACTAGAACTATGGCAGGGCGAGAAGGGCTGCCATTTCGCGCTTGGCAGAC
____________________________________________________________
consensus AAAGCCATGGACTAGAACTATGGCAGGGCGAGAAGGGCTGCCATTTCGCGCTTGGCAGAC
. : . : . : . : . : . :
JMSF007L01+ CAAGTAATTTACATTGTGACCACTCCATACCCAGTTTCTGCACAATTCCTTAACTTCTGC
JMSF014L04+ CAAGTAATTTACATTGTGACCACTCCATACCCAGTTTCTGCACAATTCCTTAACTTCTGC
JMSF040M17+ CAAGTAATTTACATTGTGACCACTCCATACCCAGTTTCTGCACAATTCCTTAACTTCTGC
____________________________________________________________
consensus CAAGTAATTTACATTGTGACCACTCCATACCCAGTTTCTGCACAATTCCTTAACTTCTGC
. : . : . : . : . : . :
JMSF007L01+ TAACTCTAATGGGAGTAGCTCCTCCTCCTCATTTGCAACAATGGCTGGGGCAGCAGATGA
JMSF014L04+ TAACTCTAATGGGAGTAGCTCCTCCTCCTCATTTGCAACAATGGCTGGGGCAGCAGATGA
JMSF040M17+ TAACTCTAATGGGAGTAGCTCCTCCTCCTCATTTGCAACAATGGCTGGGGCAGCAGATGA
____________________________________________________________
consensus TAACTCTAATGGGAGTAGCTCCTCCTCCTCATTTGCAACAATGGCTGGGGCAGCAGATGA
. : . : . : . : . : . :
JMSF007L01+ GGCAGTGCAGTTCACATTACTAACGGCTATGCCCGAACCCTTCGGTTTGCTTCCACAAAT
JMSF014L04+ GGCAGTGCAGTTCACATTACTAACGGCTATGCCCGAACCCTTCGGTTTGCTTCCACAAAT
JMSF040M17+ GGCAGTGCAGTTCACATTACTAACGGCTATGCCCGAACCCTTCGGTTTGCTTCCACAAAT
____________________________________________________________
consensus GGCAGTGCAGTTCACATTACTAACGGCTATGCCCGAACCCTTCGGTTTGCTTCCACAAAT
. : . : . : . : . : . :
JMSF007L01+ TTGAAGACAATTGCTCAAACCAAAGGCTCCATTGCACTGAAATTGAAATTGCAGTGAAGA
JMSF014L04+ TTGAAGACAATTGCTCAAACCAAAGGCTCCATTGCACTGAAATTGAAATTGCAGTGAAGA
JMSF040M17+ TTGAAGACAATTGCTCAAACCAAAGGCTCCATTGCACTGAAATTGAAATTGCAGTGAAGA
____________________________________________________________
consensus TTGAAGACAATTGCTCAAACCAAAGGCTCCATTGCACTGAAATTGAAATTGCAGTGAAGA
. : . : . : . : . : . :
JMSF007L01+ AGCAGGTGATAATGAGGGCATGCAGTTAAAAGGACCAGCATTTACTGCAACAACAACCAT
JMSF014L04+ AGCAGGTGATAATGAGGGCATGCAGTTAAAAGGACCAGCATTTACTGCAACAACAACCAT
JMSF040M17+ AGCAGGTGATAATGAGGGCATGCAGTTAAAAGGACCAGCATTTACTGCAACAACAACCAT
____________________________________________________________
consensus AGCAGGTGATAATGAGGGCATGCAGTTAAAAGGACCAGCATTTACTGCAACAACAACCAT
. : . : . : . : . : . :
JMSF007L01+ ATTTTCCCCTTGAATTCTGAGAAGAGAAGATTCACTGAGGAGATGAAGATGATGATGATA
JMSF014L04+ ATTTTCCCCTTGAATTCTGAGAAGAGAAGATTCACTGAGGAGATGAAGATGATGATGATA
JMSF040M17+ ATTTTCCCCTTGAATTCTGAGAAGAGAAGATTCACTGAGGAGATGAAGATGATGATGATA
____________________________________________________________
consensus ATTTTCCCCTTGAATTCTGAGAAGAGAAGATTCACTGAGGAGATGAAGATGATGATGATA
. : . : . : . : . : . :
JMSF007L01+ AGAAACTATTTGCTGTGAAACC
JMSF014L04+ AGAAACTATTTGCTGTGAAACCAAACACCATCAAAGCGTGTGTGGTTCTT
JMSF040M17+ AGAAACTATTTGCTGTGAAACCAAACACCATCAAAGCGTGTGTGGTTCTTGATGAAGTCA
____________________________________________________________
consensus AGAAACTATTTGCTGTGAAACCAAACACCATCAAAGCGTGTGTGGTTCTTGATGAAGTCA