clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF034B21 | Sequence | 437 | 010843 (3) | ref|XP_009791815.1| | 3e-22 | PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Nicotiana sylvestris] | 713 | 005780 (2) | ref|XP_008218485.1| | 2e-50 | PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Prun |
JMFS056D09 | Sequence | 565 | 010843 (3) | emb|CDP04163.1| | 4e-48 | unnamed protein product [Coffea canephora] | |||||
JMSF040D07 | Sequence | 664 | 010843 (3) | gb|EYU39736.1| | 1e-54 | hypothetical protein MIMGU_mgv1a003228mg [Erythranthe guttata] | 853 | 005780 (2) | ref|XP_008218485.1| | 6e-85 | PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Prun |
This contig is upended
. : . : . : . : . : . :
JMSF040D07+ TGCT
____________________________________________________________
consensus TGCT
. : . : . : . : . : . :
JMFS056D09+ CAAAAAGGATGGCCGCAAGCAGCAGAACTAATTCC
JMSF040D07+ AATATACCCTTGCCAGCATGTGACACAAAAAGGATGGCCGCAAGCAGCAGAACTAATTCC
____________________________________________________________
consensus AATATACCCTTGCCAGCATGTGACACAAAAAGGATGGCCGCAAGCAGCAGAACTAATTCC
. : . : . : . : . : . :
JMFS056D09+ ATCACGAGGATACGTCTCAAAACAGATCCCACAAGTTATCTCTTTTTCATTAGGAAGTGG
JMSF040D07+ ATCACGAGGATACGTCTCAAAACAGATCCCACAAGTTATCTCTTTTTCATTAGGAAGTGG
____________________________________________________________
consensus ATCACGAGGATACGTCTCAAAACAGATCCCACAAGTTATCTCTTTTTCATTAGGAAGTGG
. : . : . : . : . : . :
JMFS056D09+ AGTAGGATTCTCTAACAAGCCAACAGTCCTGCGAACCTTCTCTTCATCTGCAAACCATTC
JMSF040D07+ AGTAGGATTCTCTAACAAGCCAACAGTCCTGCGAACCTTCTCTTCATCTGCAAACCATTC
____________________________________________________________
consensus AGTAGGATTCTCTAACAAGCCAACAGTCCTGCGAACCTTCTCTTCATCTGCAAACCATTC
. : . : . : . : . : . :
JMFS056D09+ ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
JMSF040D07+ ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
____________________________________________________________
consensus ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
. : . : . : . : . : . :
JMFS056D09+ TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
JMSF040D07+ TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
____________________________________________________________
consensus TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
. : . : . : . : . : . :
JMFS056D09+ AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
JMSF040D07+ AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
____________________________________________________________
consensus AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
. : . : . : . : . : . :
JMFS056D09+ ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCATGATGACGTCATCGTCGTCGGAGTC
JMFF034B21+ ATGACGTCATCGTCGTCGGAGTC
JMSF040D07+ ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCATGATGACGTCATCGTCGTCGGAGTC
____________________________________________________________
consensus ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCATGATGACGTCATCGTCGTCGGAGTC
. : . : . : . : . : . :
JMFS056D09+ TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
JMFF034B21+ TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
JMSF040D07+ TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
____________________________________________________________
consensus TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
. : . : . : . : . : . :
JMFS056D09+ GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCGCACCTCTCGGCTCTCTCTCTCTCT
JMFF034B21+ GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCTCACCTCTCGGCTCTCTCTCTCTCT
JMSF040D07+ GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCGCACCTCTCGGCTCTCTCTCTCTCT
____________________________________________________________
consensus GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCGCACCTCTCGGCTCTCTCTCTCTCT
. : . : . : . : . : . :
JMFS056D09+ CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAG
JMFF034B21+ CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAG
JMSF040D07+ CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAGAAATGACTCA
____________________________________________________________
consensus CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAGAAATGACTCA
. : . : . : . : . : . :
JMSF040D07+ TCTTTTGGAAAGAAGCTTTTGTTATTCACTCCCCATTTTATATTGGTGGAACACAGTACC
____________________________________________________________
consensus TCTTTTGGAAAGAAGCTTTTGTTATTCACTCCCCATTTTATATTGGTGGAACACAGTACC