Contig 010840:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014G17Sequence574010840 (7)gb|ABY19575.1|4e-107actin [Ipomoea batatas]762000371 (8)gb|ACJ05348.1|2e-91actin [Camellia sinensis]
JMFF017H02Sequence589010840 (7)gb|ABY19575.1|3e-110actin [Ipomoea batatas]602000371 (8)gb|AAW83504.1|3e-23actin [Ipomoea batatas]
JMFF051L07Sequence588010840 (7)gb|ABY19575.1|3e-112actin [Ipomoea batatas]490000371 (8)gb|AHA91825.1|7e-06actin-1, partial [Rosa hybrid cultivar]
JMFS014H12Sequence417010840 (7)gb|AGA83501.1|3e-98actin, partial [Aconitum balfourii]
JMSF007N12Sequence268010840 (7)gb|AAK84834.1|1e-25actin [Elaeis oleifera]770000371 (8)gb|ACJ05348.1|2e-117actin [Camellia sinensis]
JMSF039O16Sequence661010840 (7)gb|ABY19575.1|1e-128actin [Ipomoea batatas]575000371 (8)gb|AHA91825.1|6e-22actin-1, partial [Rosa hybrid cultivar]
JMSF040O16Sequence161010840 (7)gb|AEQ39166.1|5e-28actin [Trifolium repens]130015128

Alignment

This contig is upended


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JMSF039O16+                                                                      C
                      ____________________________________________________________
consensus                                                                        C
 
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JMSF040O16+                                                                 ACACCA
JMSF039O16+           NTAAGGATGGCGTGAGGAAGAGCATAACCTTCATAAATTGGTACTGTGTGACTAACACCA
                      ____________________________________________________________
consensus             NTAAGGATGGCGTGAGGAAGAGCATAACCTTCATAAATTGGTACTGTGTGACTAACACCA
 
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JMFF051L07+               CAGAATCCAGCACAATACCAGTTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
JMFF017H02+                   ATCCAGCACAATACCAGTTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
JMFF014G17+                                    TTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
JMFS014H12+                            AATACCAGTTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
JMSF040O16+           TCACCAGAATCCAGCACAATACCAGTTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
JMSF039O16+           TCACCAGAATCCAGCACAATACCAGTTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
                      ____________________________________________________________
consensus             TCACCAGAATCCAGCACAATACCAGTTGTACGACCACTGGCATAGAGAGAGAGCACAGCC
 
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JMFF051L07+           TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTTGGGTCATCTTC
JMFF017H02+           TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTTGGGTCATCTTC
JMFF014G17+           TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTTGGGTCATCTTC
JMFS014H12+           TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTTGGGTCATCTTC
JMSF040O16+           TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTNGGGTCATCTTC
JMSF039O16+           TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTTGGGTCATCTTC
                      ____________________________________________________________
consensus             TGAATAGCAACATACATAGCAGGAACATTAAAAGTCTCAAACATGATTTGGGTCATCTTC
 
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JMFF051L07+           TCCCTGTTAGCTTTGGGGTTGAGGGGTGCCTCAGTGAGAAGGACAGGGTGCTCCTCAGGA
JMFF017H02+           TCCCTGTTAGCTTTGGGGTTGAGGGGTGCCTCAGTGAGAAGGACAGGGTGCTCCTCAGGA
JMFF014G17+           TCCCTGTTAGCTTTGGGGTTGAGGGGTGCCTCAGTGAGAAGGACAGGGTGCTCCTCAGGA
JMFS014H12+           TCCCTGTTAGCTTTGGGGTTGAGGGGTGCCTCAGTGAGAAGGACAGGGTGCTCCTCAGGA
JMSF040O16+           TCCCTGTTAGCTTNGGGGTTGAGGGGTGC                               
JMSF039O16+           TCCCTGTTAGCTTTGGGGTTGAGGGGTGCCTCAGTGAGAAGGACAGGGTGCTCCTCAGGA
                      ____________________________________________________________
consensus             TCCCTGTTAGCTTTGGGGTTGAGGGGTGCCTCAGTGAGAAGGACAGGGTGCTCCTCAGGA
 
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JMFF051L07+           GCAACACGAAGCTCATTGTAGAATGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTG
JMFF017H02+           GCAACACGAAGCTCATTGTAGAATGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTG
JMFF014G17+           GCAACACGAAGCTCATTGTAGAATGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTG
JMFS014H12+           GCAACACGAAGCTCATTGTAGAATGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTG
JMSF039O16+           GCAACACGAAGCTCATTGTAGAATGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTG
                      ____________________________________________________________
consensus             GCAACACGAAGCTCATTGTAGAATGTGTGATGCCAAATCTTTTCCATGTCATCCCAGTTG
 
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JMFF051L07+           CTGACAATACCATGCTCAATGGGGTATTTCAAGGTCAAGATACCTCGCTTAGACTGGGCT
JMFF017H02+           CTGACAATACCATGCTCAATGGGGCATTTCAAGGTCAAGATACCTCGCTTAGACTGGGCT
JMFF014G17+           CTGACAATACCATGCTCAATGGGGTATTTCAAGGTCAAGATACCTCGCTTAGACTGGGCT
JMFS014H12+           CTGACAATACCATGCTCAATGGGGTATTTCAAGGTCAAGATACCTCGCTTAGACTGGGCT
JMSF039O16+           CTGACAATACCATGCTCAATGGGGTATTTCAAGGTCAAGATACCTCGCTTAGACTGGGCT
                      ____________________________________________________________
consensus             CTGACAATACCATGCTCAATGGGGTATTTCAAGGTCAAGATACCTCGCTTAGACTGGGCT
 
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JMFF051L07+           TCATCACCCACATAGGCATCCTTCTGTCCCATCCCAACCATAACACCAGTGTGCCTAGGA
JMFF017H02+           TCATCACCCACATAGGCATCCTTCTGTCCCATCCCAACCATAACACCAGTGTGCCTAGGA
JMSF007N12+                                         ATCCCAACCATAACACCAGTGTGCCTAGGA
JMFF014G17+           TCATCACCCACATAGGCATCCTTCTGTCCCATCCCAACCATAACACCAGTGTGCCTAGGA
JMFS014H12+           TCATCACCCACATAGGCATCCTTCTGTCCCATCCCAACCATAACACCAGTGTGCCTAGGA
JMSF039O16+           TCATCACCCACATAGGCATCCTTCTGTCCCATCCCAACCATAACACCAGTGTGCCTAGGA
                      ____________________________________________________________
consensus             TCATCACCCACATAGGCATCCTTCTGTCCCATCCCAACCATAACACCAGTGTGCCTAGGA
 
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JMFF051L07+           CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
JMFF017H02+           CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
JMSF007N12+           CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
JMFF014G17+           CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
JMFS014H12+           CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
JMSF039O16+           CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
                      ____________________________________________________________
consensus             CGACCAACAATACTGGGAAACACTGCTCTTGGAGCATCATCACCAGCAAACCCAGCCTTC
 
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JMFF051L07+           ACCATTCCCGTTCCATTGTCACAGACAAGGGGCTGAATATCCTCAGCATCTGCCATTTTT
JMFF017H02+           ACCATTCCCGTTCCATTGTCACAGACAAGGGGCTGAATATCCTCAGCATCTGCCATTTTT
JMSF007N12+           ACCATTCCCGTTCCATTGTCACAGACAAGGGGCTGAATATCCTCAGCATCTGCCATTTTT
JMFF014G17+           ACCATTCCCGTTCCATTGTCACAGACAAGGGGCTGAATATCCTCAGCATCTGCCATTTTT
JMFS014H12+           ACCATTCCCGTTCC                                              
JMSF039O16+           ACCATTCCCGTTCCATTGTCACAGACAAGGGGCTGAATATCCTCAGCATCTGCCATTTTT
                      ____________________________________________________________
consensus             ACCATTCCCGTTCCATTGTCACAGACAAGGGGCTGAATATCCTCAGCATCTGCCATTTTT
 
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JMFF051L07+           TATGAAACGGAAAGTGAAGTAGAAACGAGATCGGAGAAAATGATTTGTCACCGGAGACGA
JMFF017H02+           TATGAAACGGAAAGCNAAGTAGAAACGAGATCGGAGAAAATGATTTGTCACCGGAGACGA
JMSF007N12+           TATGAAACGGAAAGTGAAGTAGAAACGAGATCGGAGAAAATGATTTGTCACCGGAGACGA
JMFF014G17+           TATGAAACGGAAAGTGAAGTAGAAACGAGATCGGAGAAAATGATTTGTCACCGGAGACGA
JMSF039O16+           TATGAAACGGAAAGTGAAGTAGAAACGAGATCGGAGAAAATGATTTGTCACCGGAGACGA
                      ____________________________________________________________
consensus             TATGAAACGGAAAGTGAAGTAGAAACGAGATCGGAGAAAATGATTTGTCACCGGAGACGA
 
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JMFF051L07+           CAGCCGCCGGCCTCGCTTTCTCTCTGGTGCCGAAGGTGTTCGAAAACAAATT        
JMFF017H02+           CAGCCGCCGGCCTCGCTTTCTCTCTGGTGCCGAAGGTGTTCGAAAACAAATTAGGAG   
JMSF007N12+           CAGCCGCCGGCCTCGCTTTCTCTCTGGTGCCGAAGGTGTTCGAAAACAAATTAGGAG   
JMFF014G17+           CAGCCGCCGGCCTCGCTTTCTCTCTGGTGCCGAAGGTGTTCGAAAACAAATTAGGAG   
JMSF039O16+           CAGCCGCCGGCCTCGCTTTCTCTCTGGTGCCGAAGGTGTTCGAAAACAAATTAGGAGACC
                      ____________________________________________________________
consensus             CAGCCGCCGGCCTCGCTTTCTCTCTGGTGCCGAAGGTGTTCGAAAACAAATTAGGAGACC