Contig 010838:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039K23Sequence672010838 (2)ref|XP_010320228.1|1e-46PREDICTED: crt homolog 3 isoform X3 [Solanum lycopersicum]834010838 (2)ref|XP_011074278.1|5e-68PREDICTED: crt homolog 1-like [Sesamum indicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-                                          AAATATTTTAATGGGTAATAATAAAGAA
                      ____________________________________________________________
consensus                                             AAATATTTTAATGGGTAATAATAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          TTATAGACTCGCAATCCCCAAGAACGTTTATCAGTTTCAAATGAAGCAAATCAATCTCGC
                      ____________________________________________________________
consensus             TTATAGACTCGCAATCCCCAAGAACGTTTATCAGTTTCAAATGAAGCAAATCAATCTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          ACAGTTTCTGAGTCTTGCTTGAGTGGCCACCGTAAGTTGTACAGAACAAGACCTATGATA
                      ____________________________________________________________
consensus             ACAGTTTCTGAGTCTTGCTTGAGTGGCCACCGTAAGTTGTACAGAACAAGACCTATGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          AGAACCAAACTGCCTAGAAGGAAGAAAGGGCTCAAGCTTGAACCTTCCGGGAGATATGGC
                      ____________________________________________________________
consensus             AGAACCAAACTGCCTAGAAGGAAGAAAGGGCTCAAGCTTGAACCTTCCGGGAGATATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          ATTGGAAGAGAAAGTAGATAAATTGACAATGGTACTGATGACATCACAGCAAGGGAAGAA
                      ____________________________________________________________
consensus             ATTGGAAGAGAAAGTAGATAAATTGACAATGGTACTGATGACATCACAGCAAGGGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          ACAACAGCCGTCGAAATTTTCACCAGATTGAGAATCGATATGTTGAAAGCTATATTGGTA
                      ____________________________________________________________
consensus             ACAACAGCCGTCGAAATTTTCACCAGATTGAGAATCGATATGTTGAAAGCTATATTGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          GTTATGTAAAGGAGAGGCAGCAATGGGGCTCCGTCACAGCCTGATGTATCATTTCCAATA
                      ____________________________________________________________
consensus             GTTATGTAAAGGAGAGGCAGCAATGGGGCTCCGTCACAGCCTGATGTATCATTTCCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          TTGAAGAAGCAACCAGCTCCACTCTTGAGGAAAGAAGGCAGCTGAGAAAATGGTATGCCC
                      ____________________________________________________________
consensus             TTGAAGAAGCAACCAGCTCCACTCTTGAGGAAAGAAGGCAGCTGAGAAAATGGTATGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          TTCAAGTTTGACAGGAAAGGCAGAAATAGTAGAACAAAAAGAGCCTGGAATCCAGATCCA
                      ____________________________________________________________
consensus             TTCAAGTTTGACAGGAAAGGCAGAAATAGTAGAACAAAAAGAGCCTGGAATCCAGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          AATGAATTGACGACAAAAATATCAAGCATCTTTCCCTTAAGTTGGGTTGCAGCATTAATG
                      ____________________________________________________________
consensus             AATGAATTGACGACAAAAATATCAAGCATCTTTCCCTTAAGTTGGGTTGCAGCATTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          AAGACAGATTCCTTAATAATGGATGCACCTGCTTGAAAAGCACTTGAAGCTATCATTAAA
                      ____________________________________________________________
consensus             AAGACAGATTCCTTAATAATGGATGCACCTGCTTGAAAAGCACTTGAAGCTATCATTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          ACAGGCCAAAGCAAAGCAATTCCAGAAAACATATTACCACTGCCTGATCCACTTGTAACT
                      ____________________________________________________________
consensus             ACAGGCCAAAGCAAAGCAATTCCAGAAAACATATTACCACTGCCTGATCCACTTGTAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          GCCAATACCACACCAGCAGCTACTAGTAAGCACCCAAAAATTTGATTTGGAGTGTATGTC
JMSF039K23+                                                           GGAGTGTATGTC
                      ____________________________________________________________
consensus             GCCAATACCACACCAGCAGCTACTAGTAAGCACCCAAAAATTTGATTTGGAGTGTATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          GTCCCAAGTAACAAAAAAGAAAGAGCCAACTGGCACACTAAAAAGGTCTCCAGCATACAT
JMSF039K23+           GTCCCAAGTAACAAAAAAGAAAGAGCCAACTGGCACACTAAAAAGGTCTCCAGCATACAT
                      ____________________________________________________________
consensus             GTCCCAAGTAACAAAAAAGAAAGAGCCAACTGGCACACTAAAAAGGTCTCCAGCATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039K23-          TCCAGAAAC                                                   
JMSF039K23+           TCCAGAAACAACTCCAAGGGCTTCCAAAAAGCCAATGAGCCAAAAACTTGACTTTGGAAG
                      ____________________________________________________________
consensus             TCCAGAAACAACTCCAAGGGCTTCCAAAAAGCCAATGAGCCAAAAACTTGACTTTGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           GGTCATCATATCTTTGGTTACTATCCCAGCACGGTATCTCAAATAAAGCATGCAAAAGTA
                      ____________________________________________________________
consensus             GGTCATCATATCTTTGGTTACTATCCCAGCACGGTATCTCAAATAAAGCATGCAAAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           AATACCCAAGTACCCGAAAGTAGTGACCTGAGCTAGGAAAAACGGATATTCCTTCATTGG
                      ____________________________________________________________
consensus             AATACCCAAGTACCCGAAAGTAGTGACCTGAGCTAGGAAAAACGGATATTCCTTCATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           AACGAGTGCGAGTTTGTAAAGCACCCGATTAGCTACCCCAAGGATCACAGTAACTGCAGA
                      ____________________________________________________________
consensus             AACGAGTGCGAGTTTGTAAAGCACCCGATTAGCTACCCCAAGGATCACAGTAACTGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           GTTCAAGATCACAGCCTTAGTATTTGAACTCGGCGGAGCATCGGTGCTCTCAGACGAAGC
                      ____________________________________________________________
consensus             GTTCAAGATCACAGCCTTAGTATTTGAACTCGGCGGAGCATCGGTGCTCTCAGACGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           GCGGATGGCCAATCTCGAGCTCGTCGACGGAGAATGCTCAGTGTGAACGGTGTTCCGGCG
                      ____________________________________________________________
consensus             GCGGATGGCCAATCTCGAGCTCGTCGACGGAGAATGCTCAGTGTGAACGGTGTTCCGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           TCGGATTTCGAAACGTTGACCGAGGAGGTTGATCGGAAAAGAGGGTGGAAGGGAGAGATT
                      ____________________________________________________________
consensus             TCGGATTTCGAAACGTTGACCGAGGAGGTTGATCGGAAAAGAGGGTGGAAGGGAGAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           GTGACGACGGTTTGAAGAAGAAGGCGGCATTGCCGGAAGGCGTCCATTGATGACGTGGTG
                      ____________________________________________________________
consensus             GTGACGACGGTTTGAAGAAGAAGGCGGCATTGCCGGAAGGCGTCCATTGATGACGTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           AGAAGTAAGAGTGCGGAAATGTGGTGTTAAAAATCTGGCGCGAGTACTACGAGCGGCACA
                      ____________________________________________________________
consensus             AGAAGTAAGAGTGCGGAAATGTGGTGTTAAAAATCTGGCGCGAGTACTACGAGCGGCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039K23+           GATTGATTCCATGAGGACAGGGAAATGGCGGTGCTGTGTTGCCGTTTACCAGCTACCTCC
                      ____________________________________________________________
consensus             GATTGATTCCATGAGGACAGGGAAATGGCGGTGCTGTGTTGCCGTTTACCAGCTACCTCC