Contig 010836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032E08Sequence555010836 (3)emb|CDO99464.1|2e-39unnamed protein product [Coffea canephora]630004338 (3)ref|XP_009780205.1|7e-84PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020
JMSF014L17Sequence511010836 (3)emb|CDO99464.1|1e-45unnamed protein product [Coffea canephora]740004338 (3)ref|XP_009780205.1|4e-95PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020
JMSF039H07Sequence668010836 (3)emb|CDO99464.1|4e-46unnamed protein product [Coffea canephora]899004338 (3)ref|XP_009780205.1|2e-121PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020

Alignment

This contig is upended


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JMSF014L17+                             CTCTTGATAACCAGCAGCACCACTAACTTTTTGCGCATCAGG
                      ____________________________________________________________
consensus                               CTCTTGATAACCAGCAGCACCACTAACTTTTTGCGCATCAGG
 
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JMSF014L17+           TTCAGACTTTAGGGCAGCTAATGCACTGGTGGCGTCATCTTCCTCCTCACCAAGCTGCAC
                      ____________________________________________________________
consensus             TTCAGACTTTAGGGCAGCTAATGCACTGGTGGCGTCATCTTCCTCCTCACCAAGCTGCAC
 
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JMSF014L17+           CAATCTACAAAGGTCTGATGTGTTAAATCCCAAACTCCCTCCCTGCAAAGAAGAAGCAGG
JMFF032E08+                                                    CCTGCAAAGAAGAAGCAGG
JMSF039H07+                                                    CCTGCAAAGAAGAAGCAGG
                      ____________________________________________________________
consensus             CAATCTACAAAGGTCTGATGTGTTAAATCCCAAACTCCCTCCCTGCAAAGAAGAAGCAGG
 
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JMSF014L17+           GGAGGGCTCATTGAGNTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
JMFF032E08+           GGAGGGCTCATTGAGCTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
JMSF039H07+           GGAGGGCTCATTGAGCTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
                      ____________________________________________________________
consensus             GGAGGGCTCATTGAGCTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
 
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JMSF014L17+           CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
JMFF032E08+           CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
JMSF039H07+           CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
                      ____________________________________________________________
consensus             CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
 
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JMSF014L17+           TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
JMFF032E08+           TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
JMSF039H07+           TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
                      ____________________________________________________________
consensus             TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
 
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JMSF014L17+           GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
JMFF032E08+           GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
JMSF039H07+           GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
                      ____________________________________________________________
consensus             GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
 
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JMSF014L17+           TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGAGAGCGGCTTTGGG
JMFF032E08+           TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGGGAGCGGCTTTGGG
JMSF039H07+           TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGAGAGCGGCTTTGGG
                      ____________________________________________________________
consensus             TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGAGAGCGGCTTTGGG
 
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JMSF014L17+           GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGA             
JMFF032E08+           GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGA             
JMSF039H07+           GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGATGAGGTGCGATTG
                      ____________________________________________________________
consensus             GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGATGAGGTGCGATTG
 
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JMSF039H07+           CGTACGCGGCAAAAGCATGAAGAACCACCGCGCTGAGCCGCACGCCGCAGCCTGCTGACC
                      ____________________________________________________________
consensus             CGTACGCGGCAAAAGCATGAAGAACCACCGCGCTGAGCCGCACGCCGCAGCCTGCTGACC