| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023O15 | Sequence | 595 | 010832 (6) | ref|XP_006351669.1| | 1e-63 | PREDICTED: rho-N domain-containing protein 1, chloroplastic-like [Solanum tuber | 771 | 010832 (6) | ref|XP_009614288.1| | 4e-53 | PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos |
| JMSF039C04 | Sequence | 647 | 010832 (6) | ref|XP_006351669.1| | 1e-57 | PREDICTED: rho-N domain-containing protein 1, chloroplastic-like [Solanum tuber | 850 | 010832 (6) | ref|XP_009614288.1| | 7e-47 | PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos |
| JMSF046F13 | Sequence | 778 | 010832 (6) | ref|XP_009614288.1| | 2e-74 | PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos | 833 | 010832 (6) | ref|XP_009614288.1| | 6e-41 | PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos |
This contig is upended
. : . : . : . : . : . :
rJMSF039C04- CAATTGGTGCATATTGAAAAGGGAATAAAACCAGGCAAGGGATTATGAAGCTAA
____________________________________________________________
consensus CAATTGGTGCATATTGAAAAGGGAATAAAACCAGGCAAGGGATTATGAAGCTAA
. : . : . : . : . : . :
rJMSF039C04- TGGAAAGGTGAAGCTGAGAATTTAAGATAACCAAAGCTGTCTAACAGTATTGTTTAGTAA
rJMSF046F13- GTCTAACAGTATTGTTTAGTAA
____________________________________________________________
consensus TGGAAAGGTGAAGCTGAGAATTTAAGATAACCAAAGCTGTCTAACAGTATTGTTTAGTAA
. : . : . : . : . : . :
rJMSF039C04- AAGGGGGAAAAAAATGGTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
rJMSF046F13- AAGGGGGAAAAAAATGGTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
rJMSF023O15- GTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
____________________________________________________________
consensus AAGGGGGAAAAAAATGGTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
. : . : . : . : . : . :
rJMSF039C04- AAACAAAATCTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
rJMSF046F13- AAACAAAATTTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
rJMSF023O15- AAACAAAATTTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
____________________________________________________________
consensus AAACAAAATTTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
. : . : . : . : . : . :
rJMSF039C04- ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
rJMSF046F13- ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
rJMSF023O15- ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
____________________________________________________________
consensus ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
. : . : . : . : . : . :
rJMSF039C04- CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
rJMSF046F13- CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
rJMSF023O15- CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
____________________________________________________________
consensus CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
. : . : . : . : . : . :
rJMSF039C04- TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
rJMSF046F13- TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
rJMSF023O15- TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
____________________________________________________________
consensus TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
. : . : . : . : . : . :
rJMSF039C04- TCCACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
rJMSF046F13- TCCACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
rJMSF023O15- TACACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
____________________________________________________________
consensus TCCACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
. : . : . : . : . : . :
rJMSF039C04- CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
rJMSF046F13- CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
rJMSF023O15- CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
____________________________________________________________
consensus CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
. : . : . : . : . : . :
rJMSF039C04- GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
rJMSF046F13- GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
rJMSF023O15- GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
____________________________________________________________
consensus GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
. : . : . : . : . : . :
rJMSF039C04- GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
rJMSF046F13- GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
rJMSF023O15- GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
JMSF046F13+ CGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
____________________________________________________________
consensus GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
. : . : . : . : . : . :
rJMSF039C04- TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
rJMSF046F13- TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
rJMSF023O15- TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
JMSF046F13+ TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
____________________________________________________________
consensus TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
. : . : . : . : . : . :
rJMSF039C04- CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
rJMSF046F13- CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
rJMSF023O15- CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
JMSF023O15+ TCTGAACTGCA
JMSF046F13+ CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
____________________________________________________________
consensus CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
. : . : . : . : . : . :
rJMSF039C04- TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
rJMSF046F13- TGTTTCCTTAAAAGCTTCAAAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
rJMSF023O15- TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
JMSF023O15+ TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
JMSF046F13+ TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
JMSF039C04+ AGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
____________________________________________________________
consensus TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
. : . : . : . : . : . :
rJMSF039C04- AGCCTTTGGCTCTGGAA
rJMSF046F13- AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
rJMSF023O15- AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
JMSF023O15+ AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
JMSF046F13+ AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
JMSF039C04+ AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
____________________________________________________________
consensus AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
. : . : . : . : . : . :
rJMSF046F13- CTGCACC
rJMSF023O15- CTGCACCT
JMSF023O15+ CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
JMSF046F13+ CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
JMSF039C04+ CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
____________________________________________________________
consensus CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
. : . : . : . : . : . :
JMSF023O15+ TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
JMSF046F13+ TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
JMSF039C04+ TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
____________________________________________________________
consensus TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
. : . : . : . : . : . :
JMSF023O15+ AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
JMSF046F13+ AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
JMSF039C04+ AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
____________________________________________________________
consensus AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
. : . : . : . : . : . :
JMSF023O15+ CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
JMSF046F13+ CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
JMSF039C04+ CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
____________________________________________________________
consensus CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
. : . : . : . : . : . :
JMSF023O15+ AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
JMSF046F13+ AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
JMSF039C04+ AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
____________________________________________________________
consensus AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
. : . : . : . : . : . :
JMSF023O15+ CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
JMSF046F13+ CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
JMSF039C04+ CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
____________________________________________________________
consensus CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
. : . : . : . : . : . :
JMSF023O15+ TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
JMSF046F13+ TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
JMSF039C04+ TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
____________________________________________________________
consensus TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
. : . : . : . : . : . :
JMSF023O15+ CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAAT
JMSF046F13+ CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAATGGCGGTTTCGCTCCCG
JMSF039C04+ CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAATGGCGGTTTCGCTCCCG
____________________________________________________________
consensus CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAATGGCGGTTTCGCTCCCG
. : . : . : . : . : . :
JMSF046F13+ CGTTTGGTCG
JMSF039C04+ CGTTTGGTCGATACTTGATAAGGAACGTGGGTGGGGATAATCGACTGTTCCGGACTTCGT
____________________________________________________________
consensus CGTTTGGTCGATACTTGATAAGGAACGTGGGTGGGGATAATCGACTGTTCCGGACTTCGT