Contig 010827:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038G23Sequence665010827 (2)984010827 (2)gb|AAF45022.1|1e-10RNase-like protein [Calystegia sepium]

Alignment

This contig is upended


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rJMSF038G23-                                                                     C
                      ____________________________________________________________
consensus                                                                        C
 
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rJMSF038G23-          ACTCCTAATTATCAACTAACCGTCATTTACCAAACAGACATCTTCTCTTGACTACTCTTC
                      ____________________________________________________________
consensus             ACTCCTAATTATCAACTAACCGTCATTTACCAAACAGACATCTTCTCTTGACTACTCTTC
 
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rJMSF038G23-          AGTAATCACTATAAATATCAGCTTTCCCATCTCGAATTGCAGCATCAACATATACAAGCA
                      ____________________________________________________________
consensus             AGTAATCACTATAAATATCAGCTTTCCCATCTCGAATTGCAGCATCAACATATACAAGCA
 
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rJMSF038G23-          TTTCAATCTTCAAAAGCTTTTATGTTTGCCATGGCTTCTCTCCCCGCCCGACTCATCATC
                      ____________________________________________________________
consensus             TTTCAATCTTCAAAAGCTTTTATGTTTGCCATGGCTTCTCTCCCCGCCCGACTCATCATC
 
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rJMSF038G23-          CTCCCTCTCTTACTCCTATTCGGCACTTGCAACGCTAACCTAATCCGCGGCGGAGATACG
                      ____________________________________________________________
consensus             CTCCCTCTCTTACTCCTATTCGGCACTTGCAACGCTAACCTAATCCGCGGCGGAGATACG
 
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rJMSF038G23-          CCGCAGAAACCGTTCGATTTCTTCGTTCTTGCTCTTTCTTGGTCTGGCACCTCTTGTTCC
                      ____________________________________________________________
consensus             CCGCAGAAACCGTTCGATTTCTTCGTTCTTGCTCTTTCTTGGTCTGGCACCTCTTGTTCC
 
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rJMSF038G23-          AGCGTTAAGGACTGCTGTCCCACCAACGCCTGTTGCAGGTATCTATCTAATTACTATTTA
JMSF038G23+                                                                 TATTTA
                      ____________________________________________________________
consensus             AGCGTTAAGGACTGCTGTCCCACCAACGCCTGTTGCAGGTATCTATCTAATTACTATTTA
 
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rJMSF038G23-          CCACACACCCTACATGTATAATATATACTACTTTTACCATATATTTCTTGCTTTCTCATA
JMSF038G23+           CCACACACCCTACATGTATAATATATACTACTTTTACCATATATTTCTTGCTTTCTCATA
                      ____________________________________________________________
consensus             CCACACACCCTACATGTATAATATATACTACTTTTACCATATATTTCTTGCTTTCTCATA
 
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rJMSF038G23-          AAAACTATATCCATTTTTGCAGCTCCGAGGTTGCTACTGGGTTCACAATCAGTAAGCCCT
JMSF038G23+           AAAACTATATCCATTTTTGCAGCTCCGAGGTTGCTACTGGGTTCACAATCAGTAAGCCCT
                      ____________________________________________________________
consensus             AAAACTATATCCATTTTTGCAGCTCCGAGGTTGCTACTGGGTTCACAATCAGTAAGCCCT
 
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rJMSF038G23-          ACAGTGTTCTTCTTATTAATTCCTAGCTTTTATATATATATATAAGAGATAGTCAGGATC
JMSF038G23+           ACAGTGTTCTTCTTATTAATTCCTAGCTTTTATATATATATATAAGAGATAGTCAGGATC
                      ____________________________________________________________
consensus             ACAGTGTTCTTCTTATTAATTCCTAGCTTTTATATATATATATAAGAGATAGTCAGGATC
 
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rJMSF038G23-          AAATGAAAATCATTCTTTCCGTGAGAACTTACGTACTACCTTGTGCAATCTGAAATGTTG
JMSF038G23+           AAATGAAAATCATTCTTTCCGTGAGAACTTACGTACTACCTTGTGCAATCTGAAATGTTG
                      ____________________________________________________________
consensus             AAATGAAAATCATTCTTTCCGTGAGAACTTACGTACTACCTTGTGCAATCTGAAATGTTG
 
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rJMSF038G23-          GCTTGTTCAACTGTTACTATCTGGTTGTGTAACTTGTAATGTGATTATGCACCTCGAGAA
JMSF038G23+           GCTTGTTCAACTGTTACTATCTGGTTGTGTAACTTGTAATGTGATTATGCACCTCGAGAA
                      ____________________________________________________________
consensus             GCTTGTTCAACTGTTACTATCTGGTTGTGTAACTTGTAATGTGATTATGCACCTCGAGAA
 
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rJMSF038G23-          CGACTATTAAAACACAATAATGTAGAGAACTCAAAGGGGTAGTTCAAGTTGTCAAATGAG
JMSF038G23+           CGACTATTAAAACACAATAATGTAGAGAACTCAAAGGGGTAGTTCAAGTTGTCAAATGAG
                      ____________________________________________________________
consensus             CGACTATTAAAACACAATAATGTAGAGAACTCAAAGGGGTAGTTCAAGTTGTCAAATGAG
 
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rJMSF038G23-          CTTTTTCGTGGGGACTATTGGTGGTATAATCCGGATTCGATTTTCACGAATGACAATTCC
JMSF038G23+           CTTTTTCGTGGGGACTATTGGTGGTATAATCCGGATTCGATTTTCACGAATGACAATTCC
                      ____________________________________________________________
consensus             CTTTTTCGTGGGGACTATTGGTGGTATAATCCGGATTCGATTTTCACGAATGACAATTCC
 
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rJMSF038G23-          GGCCTCTTGGACAAACTCTCATACTTCTCGGAACTAATGGAGATTAGTCTGCTGAACCTA
JMSF038G23+           GGCCTCTTGGACAAACTCTCATACTTCTCGGAACTAATGGAGATTAGTCTGCTGAACCTA
                      ____________________________________________________________
consensus             GGCCTCTTGGACAAACTCTCATACTTCTCGGAACTAATGGAGATTAGTCTGCTGAACCTA
 
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rJMSF038G23-          AAGTCCTAGACCAGAAGACAGATGGAGATAGATTCAGAACACCTCATAGTTTACACAAAA
JMSF038G23+           AAGTCCTAGACCAGAAGACAGATGGAGATAGATTCAGAACACCTCATAGTTTACACAAAA
                      ____________________________________________________________
consensus             AAGTCCTAGACCAGAAGACAGATGGAGATAGATTCAGAACACCTCATAGTTTACACAAAA
 
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rJMSF038G23-          TAAATACTGGNAAAGTATTTTCCAAAAAAACACTGTGACAATTTCTTAATTAACTTGAAT
JMSF038G23+           TAAATACT-GTAAAGTATTTTCCAAAAAAACACTGTGACAATTTCTTAATTAACTTGAAT
                      ____________________________________________________________
consensus             TAAATACTGGTAAAGTATTTTCCAAAAAAACACTGTGACAATTTCTTAATTAACTTGAAT
 
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rJMSF038G23-          TTACATTTGTACG                                               
JMSF038G23+           TTACATTTGTACGTGCAATCTATAATACCTGATTCTGCAGTTCGCACATGGAGCCTAGTC
                      ____________________________________________________________
consensus             TTACATTTGTACGTGCAATCTATAATACCTGATTCTGCAGTTCGCACATGGAGCCTAGTC