| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN006I14 | Sequence | 555 | 010823 (5) | ref|XP_009624026.1| | 8e-32 | PREDICTED: RPM1-interacting protein 4-like isoform X1 [Nicotiana tomentosiformi | |||||
| JMFN014H11 | Sequence | 547 | 010823 (5) | ref|XP_009624026.1| | 8e-32 | PREDICTED: RPM1-interacting protein 4-like isoform X1 [Nicotiana tomentosiformi | |||||
| JMFN033L03 | Sequence | 484 | 010823 (5) | ref|XP_009624026.1| | 3e-32 | PREDICTED: RPM1-interacting protein 4-like isoform X1 [Nicotiana tomentosiformi | |||||
| JMFN040L13 | Sequence | 612 | 010823 (5) | ref|XP_009624026.1| | 1e-31 | PREDICTED: RPM1-interacting protein 4-like isoform X1 [Nicotiana tomentosiformi | |||||
| JMSF037O07 | Sequence | 604 | 010823 (5) | ref|XP_009624026.1| | 1e-31 | PREDICTED: RPM1-interacting protein 4-like isoform X1 [Nicotiana tomentosiformi | 576 | 022608 | ref|XP_009800499.1| | 8e-48 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN040L13+ CAAAAGAATTATGATGACNAGAGAC
____________________________________________________________
consensus CAAAAGAATTATGATGACNAGAGAC
. : . : . : . : . : . :
JMFN040L13+ CATGGGTAGGTAAAGCAAACAGAAAGCTCATCTGTGAAGTATATCTATTACCAGATAAAG
JMFN033L03+ CTGTGAAGTATATCTATTACCAGATAAAG
JMFN006I14+ CTGTGAAGTATATCTATTACCAGATAAAG
JMFN014H11+ ATATCTATTACCAGATAAAG
JMSF037O07+ TAAAGCAAACAGAAAGCTCATCTGTGAAGTATATCTATTACCAGATAAAG
____________________________________________________________
consensus CATGGGTAGGTAAAGCAAACAGAAAGCTCATCTGTGAAGTATATCTATTACCAGATAAAG
. : . : . : . : . : . :
JMFN040L13+ CATATATAGATATGTAAAATATCTTTTATGTCTTTTAAGATACCTGCACCCCACACTAAC
JMFN033L03+ CATATATAGATATGTAAAATATCTTTTATGTCTTTTAAGATACCTGCACCCCACACTAAC
JMFN006I14+ CATATATAGATATGTAAAATATCTTTTATGTCTTTTAAGATACCTGCACCCCACACTAAC
JMFN014H11+ CATATATAGATATGTAAAATATCTTTTATGTCTTTTAAGATACCTGCACCCCACACTAAC
JMSF037O07+ CATATATAGATATGTAAAATATCTTTTATGTCTTTTAAGATACCTGCACCCCACACTAAC
____________________________________________________________
consensus CATATATAGATATGTAAAATATCTTTTATGTCTTTTAAGATACCTGCACCCCACACTAAC
. : . : . : . : . : . :
JMFN040L13+ ATAATTTTACATGATAAAATAGATTCCAGCAGAAGAACACAAGAGCCTCCGGCTCCTCTT
JMFN033L03+ ATAATTTTACATGATAAAATAGATTCCAGCAGAAGAACACAAGAGCCTCCGGCTCCTCTT
JMFN006I14+ ATAATTTTACATGATAAAATAGATTCCAGCAGAAGAACACAAGAGCCTCCGGCTCCTCTT
JMFN014H11+ ATAATTTTACATGATAAAATAGATTCCAGCAGAAGAACACAAGAGCCTCCGGCTACTCTT
JMSF037O07+ ATAATTTTACATGATAAAATAGATTCCAGCAGAAGAACACAAGAGCCTCCGGCTCCTCTT
____________________________________________________________
consensus ATAATTTTACATGATAAAATAGATTCCAGCAGAAGAACACAAGAGCCTCCGGCTCCTCTT
. : . : . : . : . : . :
JMFN040L13+ GTAAATGGAAAACGCCAAATTGATTATGGATATTCAATCCCATTTTCAGCTTTTCGCCTT
JMFN033L03+ GTAAATGGAAAACGCCAAATTGATTATGGATATTCAATCCCATTTTCAGCTTTTCGCCTT
JMFN006I14+ GTAAATGGAAAACGCCAAATTGATTATGGATATTCAATCCCATTTTCAGCTTTTCGCCTT
JMFN014H11+ GTAAATGGAAAACGCCAAATTGATTATGGATATTCAATCCCATTTTCAGCTTTTCGCCTT
JMSF037O07+ GTAAATGGAAAACGCCAAATTGATTATGGATATTCAATCCCATTTTCAGCTTTTCGCCTT
____________________________________________________________
consensus GTAAATGGAAAACGCCAAATTGATTATGGATATTCAATCCCATTTTCAGCTTTTCGCCTT
. : . : . : . : . : . :
JMFN040L13+ TTCCACAGCCTTGTCAAGAATCCACATGAGGGTTCTGTATGCAGCAAAACCATTTTTTAG
JMFN033L03+ TTCCACAGCCTTGTCAAGAATCCACATGAGGGTTCTGTATGCAGCAAAACCATTTTTTAG
JMFN006I14+ TTCCACAGCCTTGTCAAGAATCCACATGAGGGTTCTGTATGCAGCAAAACCATTTTTTAG
JMFN014H11+ TTCCACAGCCTTGTCAAGAATCCACATGAGGGTTCTGTATGCAGCAAAACCATTTTTTAG
JMSF037O07+ TTCCACAGCCTTGTCAAGAATCCACATGAGGGTTCTGTATGCAGCAAAACCATTTTTTAG
____________________________________________________________
consensus TTCCACAGCCTTGTCAAGAATCCACATGAGGGTTCTGTATGCAGCAAAACCATTTTTTAG
. : . : . : . : . : . :
JMFN040L13+ CCGGTGGTTTTGATGGATCTGCTGCAGGTTTAGTGTTGGAATCAGCCTTTGATGGTGATT
JMFN033L03+ CCGGTGGTTTTGATGGATCTGCTGCAGGTTTAGTGTTGGAATCAGCCTTTGATGGTGATT
JMFN006I14+ CCGGTGGTTTTGATGGATCTGCTGCAGGTTTAGTGTTGGAATCAGCCTTTGATGGTGATT
JMFN014H11+ CCGGTGGTTTTGATGGATCTGCTGCAGGTTTAGTGTTGGAATCAGCCTTTGATGGTGATT
JMSF037O07+ CCGGTGGTTTTGATGGATCTGCTGCAGGTTTAGTGTTGGAATCAGCCTTTGATGGTGATT
____________________________________________________________
consensus CCGGTGGTTTTGATGGATCTGCTGCAGGTTTAGTGTTGGAATCAGCCTTTGATGGTGATT
. : . : . : . : . : . :
JMFN040L13+ CAGGCTTACCACCCGTTTTCTTTTCATCCCTGGCCTTGTTAAAAATCACAGTAAATCCTT
JMFN033L03+ CAGGCTTACCACCCGTTTTCTTTTCATCCCTGGCCTTGTTAAAAATCACAGTAAATCCTT
JMFN006I14+ CAGGCTTACCACCCGTTTTCTTTTCATCCCTGGCCTTGTTAAAAATCACAGTAAATCCTT
JMFN014H11+ CAGGCTTACCACCCGTTTTCTTTTCATCCCTGGCCTTGTTAAAAATCACAGTAAATCCTT
JMSF037O07+ CAGGCTTACCACCCGTTTTCTTTTCATCCCTGGCCTTGTTAAAAATCACAGTAAATCCTT
____________________________________________________________
consensus CAGGCTTACCACCCGTTTTCTTTTCATCCCTGGCCTTGTTAAAAATCACAGTAAATCCTT
. : . : . : . : . : . :
JMFN040L13+ CTGCTGAAGCTGGGTCGTTAACATCCCATTCACCAAACTTTGGCAAGGGTCGACCCTTCT
JMFN033L03+ CTGCTGAAGCTGGGTCGTTAACATCCCATTCACCAAACTTTGGCAAGGGTCGACCCTTCT
JMFN006I14+ CTGCTGAAGCTGGGTCGTTAACATCCCATTCACCAAACTTTGGCAAGGGTCGACCCTTCT
JMFN014H11+ CTGCTGAAGCTGGGTCGTTAACATCCCATTCACCAAACTTTGGCAAGGGTCGACCCTTCT
JMSF037O07+ CTGCTGAAGCTGGGTCGTTAACATCCCATTCACCAAACTTTGGCAAGGGTCGACCCTTCT
____________________________________________________________
consensus CTGCTGAAGCTGGGTCGTTAACATCCCATTCACCAAACTTTGGCAAGGGTCGACCCTTCT
. : . : . : . : . : . :
JMFN040L13+ CTTCCGACATGAATCCACTCACTAGATGAGTCTTGCTGGAAAATGAATTGTGCTATTGGC
JMFN033L03+ CTTCCGACATGAATCCACTCACTAGATGAGTCTTG
JMFN006I14+ CTTCCGACATGAATCCACTCACTAGATGAGTCTTGCTGGAAAATGAATTGTGCTATTGGC
JMFN014H11+ CTTCCGACATGAATCCACTCACTAGATGAGTCTTGCTGGAAAATGAATTGTGCTATTGGC
JMSF037O07+ CTTCCGACATGAATCCACTCACTAGATGAGTCTTGCTGGAAAATGAATTGTGCTATTGGC
____________________________________________________________
consensus CTTCCGACATGAATCCACTCACTAGATGAGTCTTGCTGGAAAATGAATTGTGCTATTGGC
. : . : . : . : . : . :
JMFN040L13+ AGAGGGAGAGAAAGCGAGCAAGAGAGAGAGAGAGAGAGAGAGAAAG
JMFN006I14+ AGAGGGAGAGAAAGCGAGCAAGAGAGAGAGAGAGAGAGAGAGAAAG
JMFN014H11+ AGAGGGAGAGAAAGCGAGCAAGAGAGAGAGAGAGAGAGAGAGAAAG
JMSF037O07+ AGAGGGAGAGAAAGCGAGCAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAAATTGCC
____________________________________________________________
consensus AGAGGGAGAGAAAGCGAGCAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAAATTGCC