Contig 010822:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002B03Sequence359010822 (6)ref|XP_006342320.1|9e-25PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]780015994ref|XP_011075175.1|5e-79PREDICTED: TBCC domain-containing protein 1-like [Sesamum indicum]
JMSF005L12Sequence406010822 (6)ref|XP_009797552.1|8e-11PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]
JMSF035D18Sequence630010822 (6)ref|XP_009797552.1|8e-10PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]687010822 (6)ref|XP_009797552.1|1e-09PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]
JMSF036N10Sequence650010822 (6)ref|XP_009797552.1|9e-10PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]708011380 (3)
JMSF037N10Sequence644010822 (6)ref|XP_009797552.1|9e-10PREDICTED: TBCC domain-containing protein 1-like [Nicotiana sylvestris]634011380 (3)

Alignment

This contig is upended


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rJMSF035D18-                                                               GAGTTCT
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consensus                                                                  GAGTTCT
 
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rJMSF035D18-          AAATACACTGGTTATACAGTTGCCCTGGTGATAGCCGACTTTGGTATCCTAAATCATACA
                      ____________________________________________________________
consensus             AAATACACTGGTTATACAGTTGCCCTGGTGATAGCCGACTTTGGTATCCTAAATCATACA
 
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JMSF035D18+             TTTTCCGATGAGCATTAATTACATAAATTCATTCCAAGAAAACTGTTAGTATTCCAAT
rJMSF035D18-          TGTTTTCCGATGAGCATTAATTACATAAATTCATTCCAAGAAAACTGTTAGTATTCCAAT
                      ____________________________________________________________
consensus             TGTTTTCCGATGAGCATTAATTACATAAATTCATTCCAAGAAAACTGTTAGTATTCCAAT
 
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JMSF035D18+           GTCACGCCCTCACGCCACACATTAAATAGCCAAAGAATCCATGAAACGTTTTACAGAGTC
rJMSF035D18-          GTCACGCCCTCACGCCACACATTAAATAGCCAAAGAATCCATGAAACGTTTTACAGAGTC
                      ____________________________________________________________
consensus             GTCACGCCCTCACGCCACACATTAAATAGCCAAAGAATCCATGAAACGTTTTACAGAGTC
 
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JMSF035D18+           TTATAAAATCCTCTCTAATATCTTCCCAGAACACAAGTCTGACAGCATGAAGAAGCTAAC
rJMSF035D18-          TTATAAAATCCTCTCTAATATCTTCCCAGAACACAAGTCTGACAGCATGAAGAAGCTAAC
                      ____________________________________________________________
consensus             TTATAAAATCCTCTCTAATATCTTCCCAGAACACAAGTCTGACAGCATGAAGAAGCTAAC
 
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JMSF035D18+           AACTTCCGCAATCATAGGAAGAAAGAGGAAGCCACAACCTGGGTTGCTGTGAATATCATA
rJMSF035D18-          AACTTCCGCAATCATAGGAAGAAAGAGGAAGCCACAACCTGGGTTGCTGTGAATATCATA
JMSF036N10+                                               ACCTGGGTTGCTGTGAATATCATA
JMSF037N10+                                               ACCTGGGTTGCTGTGAATATCATA
                      ____________________________________________________________
consensus             AACTTCCGCAATCATAGGAAGAAAGAGGAAGCCACAACCTGGGTTGCTGTGAATATCATA
 
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JMSF035D18+           CAAACTCTCATTTTTGAACCCAATATCCTATTATTTCAAAGACACACAGCCTTAGTACCT
JMSF005L12+                                                            CCTTAGTACCT
rJMSF035D18-          CAAACTCTCATTTTTGAACCCAATATCCTATTATTTCAAAGACACACAGCCTTAGTACCT
JMSF036N10+           CAAACTCTCATTTTTGAACCCAATATCCTATTATTTCAAAGACACACAG--------CCT
JMSF037N10+           CAAACTCTCATTTTTGAACCCAATATCCTATTATTTCAAAGACACACAG--------CNT
                      ____________________________________________________________
consensus             CAAACTCTCATTTTTGAACCCAATATCCTATTATTTCAAAGACACACAGCCTTAGTACCT
 
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JMSF035D18+           GAGGTGAGATCTGGAGGAAATCGGAAAGGTGATGCGATTGGGTCTAACGGTTAGAAGAGC
JMSF005L12+           GAGGTGAGATCTGGAGGAAATCGGAAATGTGATGCGATTGGGTCTAACGGTTAGAAGAGC
JMSF002B03+                                                                 AAGAGC
rJMSF035D18-          GAGGTGAGATCTGGAGGAAATCGGAAAGGTGATGCGATTGGGTCTAACGGTTAGAAGAGC
JMSF036N10+           GAGGTGAGATCTGGAGGAAATCGGAAAGGTGATGCGATTGGGTCTAACGGTTAGAAGAGC
JMSF037N10+           GAGGTGAGATCTGGAGGAAATCGGAAAGGTGATGCGATTGGGTCTAACGGTTAGAAGAGC
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consensus             GAGGTGAGATCTGGAGGAAATCGGAAAGGTGATGCGATTGGGTCTAACGGTTAGAAGAGC
 
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JMSF035D18+           TTGTCCTAAATGGGGCCCAGTGTTTCGGTGCCGTCGGTGATGATGAGCTTGGGAATGGGG
JMSF005L12+           TTGTCCTAAATGGGGCCCAGTGTTTCGGTGCCGTCGGTGATGATGAGCTTGGGAATGGGG
JMSF002B03+           TTGTCCTTGATGGGGCCCAGTGTTTGGGTGCCGTCGGTGAAGATGAGCTTGGGAATGGGG
rJMSF035D18-          TTGTCCTAAATGGGGCCCAGTGTTTCGGTGCCGTCGGTGATGATGAGCTTGGGAATGGGG
JMSF036N10+           TTGTCCTAAATGGGGCCCAGTGTTTCGGTGCCGTCGGTGATGATGAGCTTGGGAATGGGG
JMSF037N10+           TTGTCCTAAATGGGGCCCAGTGTTTCGGTGCCGTCGGTGATGATGAGCTTGGGAATGGGG
                      ____________________________________________________________
consensus             TTGTCCTAAATGGGGCCCAGTGTTTCGGTGCCGTCGGTGATGATGAGCTTGGGAATGGGG
 
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JMSF035D18+           AGAAGGCCGTGCTCGAAGGGCTCACGTCATGGGTGGA---TGTAAATTGGTGAAGAAGAG
JMSF005L12+           AGAAGGCCGTGCTCGAAGGGCTCACGTCATGGGTGGA---TGTAAATTGGTGAAGAAGAG
JMSF002B03+           AGAAGGCCGTGCTCAAAGGGCTCACGTCTTGTGTGGATCATGTAAATTGGTGAAGAAGAG
rJMSF035D18-          AGAAGGCCGTGCTCGAAGGGCTCACGTCATGGGTGGA---TGTAAATTGGTGAAGAAGAG
JMSF036N10+           AGAAGGCCGTGCTCGAAGGGCTCACGTCATGGGTGGA---TGTAAATTGGTGAAGAAGAG
JMSF037N10+           AGAAGGCCGTGCTCGAAGGGCTCACGTCATGGGTGGA---TGTAAATTGGTGAAGAAGAG
                      ____________________________________________________________
consensus             AGAAGGCCGTGCTCGAAGGGCTCACGTCATGGGTGGA---TGTAAATTGGTGAAGAAGAG
 
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JMSF035D18+           GCGGACAACGTCGAGGATTGCGGCTCGGCATCATCGGTCATGGCTTATGGAATTGTTTGA
JMSF005L12+           GCGGACGACGTCGAGGATTGCGGCTCGGCATCATCGGTCAGGGCTTATGGAATTGTTTGA
JMSF002B03+           GCGGACGGCGTCGACGATTGCGGCTCGGCAGCGTCGGCCATGGCTT              
rJMSF035D18-          GCGGACAACGTCGAGGATTGCGGCTCGGCATCATCGGTCATGGCTTATGGAATTGTTTGA
JMSF036N10+           GCGGACAACGTCGAGGATTGCGGCTCGGCATCATCGGTCATGGCTTATGGAATTGTTTGA
JMSF037N10+           GCGGACAACGTCGAGGATTGCGGCTCGGCATCATCGGTCATGGCTTATGGAATTGTTTGA
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consensus             GCGGACAACGTCGAGGATTGCGGCTCGGCATCATCGGTCATGGCTTATGGAATTGTTTGA
 
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JMSF035D18+           TCTCCAGGAGAATGAGGAGTATAAGAAACCTCATAGCAAACTTCAGATCCTTGATAGTGC
JMSF005L12+           TCTCCAGGAGAATGAGGAGTATAAGAAACCTCATTGCAAACTTTAGATCCTTGATAGTGC
rJMSF035D18-          TCTCCAGGAGAATGAGGAGTATAAGAAACCTCATAGCAAACTTCAGATCCTTGATAGTGC
JMSF036N10+           TCTCCAGGAGAATGAGGAGTATAAGAAACCTCATAGCAAACTTCAGATCCTTGATAGTGC
JMSF037N10+           TCTCCAGGAGAATGAGGAGTATAAGAAACCTCATAGCAAACTTCAGATCCTTGATAGTGC
                      ____________________________________________________________
consensus             TCTCCAGGAGAATGAGGAGTATAAGAAACCTCATAGCAAACTTCAGATCCTTGATAGTGC
 
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JMSF035D18+           TGTAGACAGAGAGAGAGAGT                                        
JMSF005L12+           TGTAGACAGAGAGAGAGAG                                         
rJMSF035D18-          TGTAGACAGAGAGAGAGAGT                                        
JMSF036N10+           TGTAGACAGAGAGAGAGAGTGCAGATCGGAAATGTCCAGAAGCCAACCTTCTTCTCAACC
JMSF037N10+           TGTAGACAGAGAGAGAGAGTGCAGATCGGAAATGTCCAGAAGCCAACCTTCTTCTCAACC
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consensus             TGTAGACAGAGAGAGAGAGTGCAGATCGGAAATGTCCAGAAGCCAACCTTCTTCTCAACC