Contig 010812:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF036B21-                                                              AAGAGATC
                      ____________________________________________________________
consensus                                                                 AAGAGATC
 
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rJMSF036B21-          AGGTAGAATACAGATACTTAGATACAATCTTTGTTTAATACAGATTGTATCAATCATAGG
rJMFF030K04-                       ATACTTAGATACAATCTTTGTTTAATACAGATTGTATCAATCATAGG
rJMFF019F10-                                    ATCTTTGTTTAATACAGATTGTATCAATCATAGG
                      ____________________________________________________________
consensus             AGGTAGAATACAGATACTTAGATACAATCTTTGTTTAATACAGATTGTATCAATCATAGG
 
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rJMSF036B21-          TTCAAAGCTCCAGTACTAATCTACAGCTAGATCAAATCTAAACAACCCAGTGGAAAATGA
rJMFF030K04-          TTCAAAGCTCCAGTACTAATCTACAGCTAGATCAAATCTAAACAACCCAGTGGAAAATGA
rJMFF019F10-          TTCAAAGCTCCAGTACTAATCTACAGCTAGATCAAATCTAAACAACCCAGTGGAAAATGA
                      ____________________________________________________________
consensus             TTCAAAGCTCCAGTACTAATCTACAGCTAGATCAAATCTAAACAACCCAGTGGAAAATGA
 
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rJMSF036B21-          AAAATAAAAAGAGATGGAAAGTAGAAAATTTGGGAAGAGGAAAATGAGAATAATATCTTT
rJMFF030K04-          AAAATAAAAAGAGATGGAAAGTAGAAAATTTGGGAAGAGGAAAATGAGAATAATATCTTT
rJMFF019F10-          AAAATAAAAAGAGATGGAAAGTAGAAAATTTGGGAAGAGGAAAATGAGAATAATATCTTT
                      ____________________________________________________________
consensus             AAAATAAAAAGAGATGGAAAGTAGAAAATTTGGGAAGAGGAAAATGAGAATAATATCTTT
 
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rJMSF036B21-          TTTCATCATCATCAAGAATGTAAGATAAATTAGGGATAGCATCACCGTCGATAGAATCAA
rJMFF030K04-          TTTCATCATCATCAAGAATGTAAGATAAATTAGGGATAGCATCACCGTCGATAGAATCAA
rJMFF019F10-          TTTCATCATCATCAAGAATGTAAGATAAATTAGGGATAGCATCACCGTCGATAGAATCAA
                      ____________________________________________________________
consensus             TTTCATCATCATCAAGAATGTAAGATAAATTAGGGATAGCATCACCGTCGATAGAATCAA
 
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rJMSF036B21-          AGGTGTAGGGCGGTGACCTTTAACTCGTCGGCGACGAAGTCGTCCAAGGGAGGAGGAGGC
rJMFF030K04-          AGGTGTAGGGCGGTGACCTTTAACTCGTCGGCGACGAAGTCGTCCAAGGGAGGAGGAGGC
rJMFF019F10-          AGGTGTAGGGCGGTGACCTTTAACTCGTCGGCGACGAAGTCGTCCAAGGGAGGAGGAGGC
                      ____________________________________________________________
consensus             AGGTGTAGGGCGGTGACCTTTAACTCGTCGGCGACGAAGTCGTCCAAGGGAGGAGGAGGC
 
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rJMSF036B21-          AGGTTGAGATCGAAGGACAGGGGCTGTTTGGGGAAGAATGACGACGTGGTTTGATCCTGA
rJMFF030K04-          AGGTTGAGATCGAAGGACAGGGGCTGTTTGGGGAAGAATGACGACGTGGTTTGATCCTGA
rJMFF019F10-          AGGTTGAGATCGAAGGACAGGGGCTGTTTGGGGAAGAATGACGACGTGGTTTGATCCTGA
                      ____________________________________________________________
consensus             AGGTTGAGATCGAAGGACAGGGGCTGTTTGGGGAAGAATGACGACGTGGTTTGATCCTGA
 
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rJMSF036B21-          TCGTCCACCACGGATGATGACGAATCGCAATCGCTGTGGCAATCGTCTGGTAGCGGAGGA
rJMFF030K04-          TCGTCCACCACGGATGATGACGAATCGCAATCGCTGTGGCAATCGTCTGGTAGCGGAGGA
rJMFF019F10-          TCGTCCACCACGGATGATGACGAATCGCAATCGCTGTGGCAATCGTCTGGTAGCGGAGGA
JMSF036B21+                                                                  GAGGA
                      ____________________________________________________________
consensus             TCGTCCACCACGGATGATGACGAATCGCAATCGCTGTGGCAATCGTCTGGTAGCGGAGGA
 
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rJMSF036B21-          ACCGGAACCTTGGGACGCGGCGGCGGCTGTTTATTACGATCGGAGGGCGGGCGAGGTCCG
rJMFF030K04-          ACCGGAACCTTGGGACGCGGCGGCGGCTGTTTATTACGATCGGAGGGCGGGCGAGGTCCG
rJMFF019F10-          ACCGGAACCTTGGGACGCGGCGGCGGCTGTTTATTACGATCGGAGGGCGGGCGAGGTCCG
JMFF019F10+                               CGGCGGCTGTTTATTACGATCGGAGGGCGGGCGAGGTCCG
JMSF036B21+           ACCGGAACCTTGGGACGCGGCGGCGGCTGTTTATTACGATCGGAGGGCGGGCGAGGTCCG
                      ____________________________________________________________
consensus             ACCGGAACCTTGGGACGCGGCGGCGGCTGTTTATTACGATCGGAGGGCGGGCGAGGTCCG
 
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rJMSF036B21-          CTGGAGGACTCCACCGTGCTGCTGAGGCTGCTGCTTGCCGGCCGAGAATAGGGAAAGCGT
rJMFF030K04-          CTGGAGGATTCCACCGTGCTGCTGAGGCTGCTGCTTGCCGGCCGAGAATAGGGAAAGCGT
rJMFF019F10-          CTGGAGGACTCCACCGTGCTGCTGAGGCTGCTGCTTGCCGGCCGAGAATAGGGAAAGCGT
JMFF019F10+           CTGGAGGACTCCACCGTGCTGCTGAGGCTGCTGCTTGCCGGCCGAGAATAGGGAAAGCGT
JMSF036B21+           CTGGAGGACTCCACCGTGCTGCTGAGGCTGCTGCTTGCCGGCCGAGAATAGGGAAAGCGT
                      ____________________________________________________________
consensus             CTGGAGGACTCCACCGTGCTGCTGAGGCTGCTGCTTGCCGGCCGAGAATAGGGAAAGCGT
 
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rJMSF036B21-          TGGAAGTGAGTCTCGCCGGGGAGTGCAACCGGAGGAATAATCGAATGGCTATGATTATTA
rJMFF030K04-          TGGAAGTGAGTCTCGCCGGGGAGTGCAACCGGAGGAATAATCGAATGGCTATGATTATTA
rJMFF019F10-          TGGAAGTGAGTCTCGCCGGGGAGTGCAACCGGAGGAATAATCGAATGGCTATGATTATTA
JMFF019F10+           TGGAAGTGAGTCTCGCCGGGGAGTGCAACCGGAGGAATAATCGAATGGCTATGATTATTA
JMFF030K04+                                    CAACCGGAGGAATAATCGAATGGCTATGATTATTA
JMSF036B21+           TGGAAGTGAGTCTCGCCGGGGAGTGCAACCGGAGGAATAATCGAATGGCTATGATTATTA
                      ____________________________________________________________
consensus             TGGAAGTGAGTCTCGCCGGGGAGTGCAACCGGAGGAATAATCGAATGGCTATGATTATTA
 
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rJMSF036B21-          TTGTTATCGTTATCGCGACGATCGGTGA                                
rJMFF030K04-          TTGTTATCGTTATCGCGACGATCGGTGAAGCCGAAATTGGTTTTGGCTTTANGGCCGTGG
rJMFF019F10-          TTGTTATCGTTATCGCGACGATCGGTGAAGCCGAAATTGGTTTTGGCTTTAGGGCCGTGG
JMFF019F10+           TTGTTATCGTTATCGCGACGATCGGTGAAGCCGAAATTGGTTTTGGCTTTAGGGCCGTGG
JMFF030K04+           TTGTTATCGTTATCGCGACGATCGGTGAAGCCGAAATTGGTTTTGGCTTTAGGGCCGTGG
JMSF036B21+           TTGTTATCGTTATCGCGACGATCGGTGAAGCCGAAATTGGTTTTGGCTTTAGGGCCGTGG
                      ____________________________________________________________
consensus             TTGTTATCGTTATCGCGACGATCGGTGAAGCCGAAATTGGTTTTGGCTTTAGGGCCGTGG
 
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rJMFF030K04-          AAAGCGCGCGCGGCG                                             
rJMFF019F10-          AAGGCGCGCGCGGCGGTGTCNTAAGCGTGCGCGGCTTCCTCGGC                
JMFF019F10+           AAGGCGCGCGCGGCGGTGTCGTAGGCGTGCGCGGCTTCCTCGGCCGGTGTTGAAGGTACC
JMFF030K04+           AAGGCGCGCGCGGCGGTGTCGTAGGCGTGCGCGGCTTCCTCGG-CGGTGTTGAAGGTACC
JMSF036B21+           AAGGCGCGCGCGGCGGTGTCGTAGGCGTGCGCGGCTTCCTCGG-CGGTGTTGAAGGTACC
                      ____________________________________________________________
consensus             AAGGCGCGCGCGGCGGTGTCGTAGGCGTGCGCGGCTTCCTCGGCCGGTGTTGAAGGTACC
 
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JMFF019F10+           GAGCCAAACCCGGGCTTTCTTCACGGGGTCCCTTATCTCGGCTGCAAATCGCCCCCATGG
JMFF030K04+           GAGCCAAACCCGGGCTTTCTTCACGGGGTCCCTTATCTCGGCTGCAAATCGCCCCCATGG
JMSF036B21+           GAGCCAAACCCGGGCTTTCTTCACGGGGTCCCTTATCTCGGCTGCAAATCGCCCCCATGG
                      ____________________________________________________________
consensus             GAGCCAAACCCGGGCTTTCTTCACGGGGTCCCTTATCTCGGCTGCAAATCGCCCCCATGG
 
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JMFF019F10+           CCGCTTTCGGACCCCACGGTAGCGAGGCGGATCGGCGGCGATATTGGCAACTGGCTGTTG
JMFF030K04+           CCGCTTTCGGACCCCACGGTAGCGAGGCGGATCGGCGGCGATATTGGCAACTGGCTGTTG
JMSF036B21+           CCGCTTTCGGACCCCACGGTAGCGAGGCGGATCGGCGGCGATATTGGCAACTGGCTGTTG
                      ____________________________________________________________
consensus             CCGCTTTCGGACCCCACGGTAGCGAGGCGGATCGGCGGCGATATTGGCAACTGGCTGTTG
 
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JMFF019F10+           TATCGGTGTCGCCGGCGTTTTCCGGTGGCGCATGGCCTTGGGGAAAAAGAGGTGCGGAGA
JMFF030K04+           TATCGGTGTCGCCGGCGTTTTCCGGTGGCGCATGGCCTTGGGGAAAAAGAGGTGCGGAGA
JMSF036B21+           TATCGGTGTCGCCGGCGTTTTCCGGTGGCGCATGGCCTTGGGGAAAAAGAGGTGCGGAGA
                      ____________________________________________________________
consensus             TATCGGTGTCGCCGGCGTTTTCCGGTGGCGCATGGCCTTGGGGAAAAAGAGGTGCGGAGA
 
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JMFF019F10+           TCTGCTACGTACGGCGGCGTTAGGGATTGATGGATCGCCTGAATAGGGGATTTTCAATCT
JMFF030K04+           TCTGCTACGTACGGCGGCGTTAGGGATTGATGGATCGCCTGAATAGGGGATTTTCAATCT
JMSF036B21+           TCTGCTACGTACGGCGGCGTTAGGGATTGATGGATCGCCTGAATAGGGGATTTTCAATCT
                      ____________________________________________________________
consensus             TCTGCTACGTACGGCGGCGTTAGGGATTGATGGATCGCCTGAATAGGGGATTTTCAATCT
 
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JMFF019F10+           TCTCGTTGTTGTGGTTCCATGGTTGAAGACCACGAAGTTGAATCTCTCTTGATCTGTTTT
JMFF030K04+           TCTCGTTGTTGTGGTTCCATGGTTGAAGACCACGAAGTTGAATCTCTCTTGATCTGTTTT
JMSF036B21+           TCTCGTTGTTGTGGTTCCATGGTTGAAGACCACGAAGTTGAATCTCTCTTGATCTGTTTT
                      ____________________________________________________________
consensus             TCTCGTTGTTGTGGTTCCATGGTTGAAGACCACGAAGTTGAATCTCTCTTGATCTGTTTT
 
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JMFF019F10+           GTCTTTTTGCTTCGCAACGCAATTGTTTATTGATCACAGCAATGGAAGAAACAC      
JMFF030K04+           GTCTTTTTGCTTCGCAACGCAATTGTTTATTGATCACAGCAAT                 
JMSF036B21+           GTCTTTTTGCTTCGCAACGCAATTGTTTATTGATCACAGCAATGGAAGAAACACGCTTCC
                      ____________________________________________________________
consensus             GTCTTTTTGCTTCGCAACGCAATTGTTTATTGATCACAGCAATGGAAGAAACACGCTTCC