Contig 010808:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022L23Sequence518010808 (2)ref|XP_004230452.1|2e-35PREDICTED: YTH domain-containing family protein 1 isoform X2 [Solanum lycopersi
JMSF035L23Sequence660010808 (2)ref|XP_006349328.1|6e-47PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF022L23+                                                TTGATATATGGTGGAAACTTCCC
JMSF035L23+           ATTAATCGGACCATAGTGCATAAAGCCTTGGTTTTGGTTGATATATGGTGGAAACTTCCC
                      ____________________________________________________________
consensus             ATTAATCGGACCATAGTGCATAAAGCCTTGGTTTTGGTTGATATATGGTGGAAACTTCCC
 
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JMFF022L23+           AACCGGGTGAAACCCATTATTCATATGGCCTCCAGACTGGAAGTTCGAACCAAACTTGTT
JMSF035L23+           AACCGGGTGAAACCCATTATTCATATGGCCTCCAGACTGGAAGTTCGAACCAAACTTGTT
                      ____________________________________________________________
consensus             AACCGGGTGAAACCCATTATTCATATGGCCTCCAGACTGGAAGTTCGAACCAAACTTGTT
 
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JMFF022L23+           TAATTGTTTAATGGGCTGACTTTGCATGGAGTACTTTGAAAAGTTCGATGAATTAGTAGA
JMSF035L23+           TAATTGTTTAATGGGCTGACTTTGCATGGAGTACTTTGAAAAGTTCGATGAATTAGTAGA
                      ____________________________________________________________
consensus             TAATTGTTTAATGGGCTGACTTTGCATGGAGTACTTTGAAAAGTTCGATGAATTAGTAGA
 
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JMFF022L23+           CTGTTGACTTTCAGAATTCAAAGGCAAAGGCAAATTATTTGTCGAAAGGCCATGGTTTGT
JMSF035L23+           CTGTTGACTTTCAGAATTCAAAGGCAAAGGCAAATTATTTGTTGAAAGGCCATGGTTTGT
                      ____________________________________________________________
consensus             CTGTTGACTTTCAGAATTCAAAGGCAAAGGCAAATTATTTGTTGAAAGGCCATGGTTTGT
 
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JMFF022L23+           TTTTGAAGAATGAAAACCATTGGACTTTACTGAACCATTTGTGCCAACTGTGGATTTAAA
JMSF035L23+           TTTTGAAGAATGAAAACCATTGGACTTTACTGAACCATTTGTGCCAACTGTGGATTTAAA
                      ____________________________________________________________
consensus             TTTTGAAGAATGAAAACCATTGGACTTTACTGAACCATTTGTGCCAACTGTGGATTTAAA
 
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JMFF022L23+           ATTCCTTGTTTTAGGAACCATACTATTTGTAACATCTCCTCCATATGTTGAGCACCACGT
JMSF035L23+           ATTCCTTGTTTTAGGAACCATACTATTTGTAACATCTCCTCCATATGTTGAGCACCACGT
                      ____________________________________________________________
consensus             ATTCCTTGTTTTAGGAACCATACTATTTGTAACATCTCCTCCATATGTTGAGCACCACGT
 
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JMFF022L23+           GGGAGTCGGTTGCTGAAGATATCCTGATGATGTATAGGGTTGCTGTTTCCCGTCAGAACC
JMSF035L23+           GGGAGTCGGTTGCTGAAGATATCCTGATGATGTATAGGGTTGCTGTTTCCCGTCAGAACC
                      ____________________________________________________________
consensus             GGGAGTCGGTTGCTGAAGATATCCTGATGATGTATAGGGTTGCTGTTTCCCGTCAGAACC
 
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JMFF022L23+           GATAAATCCAGTACTATAAGGATTATAGCTGGGAAGATAATAGAGGTAAGAACCATTATC
JMSF035L23+           GATAAATCCAGTACTATAAGGATTATAGCTGGGAAGATAATAGAGGTAAGAACCATTATC
                      ____________________________________________________________
consensus             GATAAATCCAGTACTATAAGGATTATAGCTGGGAAGATAATAGAGGTAAGAACCATTATC
 
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JMFF022L23+           TGATTGGATGCCCGCATTAAAATAACCTTGATCATCATTAAGAGTTCCATTATATCCTGC
JMSF035L23+           TGATTGGATGCCCGCATTAAAATAACCTTGATCATCATTAAGAGTTCCATTATATCCTGC
                      ____________________________________________________________
consensus             TGATTGGATGCCCGCATTAAAATAACCTTGATCATCATTAAGAGTTCCATTATATCCTGC
 
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JMFF022L23+           ATAGTAATGGTCA                                               
JMSF035L23+           ATAGTAATGGTCATAGCCACCAGTAGGTGGATAAAGAACACCGGGCTTTGAAATGGTGGC
                      ____________________________________________________________
consensus             ATAGTAATGGTCATAGCCACCAGTAGGTGGATAAAGAACACCGGGCTTTGAAATGGTGGC
 
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JMSF035L23+           TTGATCAATGCCATCATTAACCCCAGTGGCAGCATTCCCCAAAGAAGGAATGGAAGATAG
                      ____________________________________________________________
consensus             TTGATCAATGCCATCATTAACCCCAGTGGCAGCATTCCCCAAAGAAGGAATGGAAGATAG